Afla008658.1
Basic Information
- Insect
- Andrena flavipes
- Gene Symbol
- lola
- Assembly
- GCA_963971345.1
- Location
- OZ020480.1:396593-399065[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 6.9e-05 0.028 14.9 0.0 21 37 218 235 200 240 0.81 2 4 9.9e-11 4e-08 33.6 0.0 7 39 255 286 252 293 0.86 3 4 0.74 3e+02 2.0 0.0 21 34 320 333 306 338 0.80 4 4 2e-11 7.9e-09 35.9 0.1 4 39 364 399 361 404 0.93
Sequence Information
- Coding Sequence
- ATGTCCGAAGCTGTTGGCCAACATGAGATTAATCAGAGCTATTGTTTCAAATGGAATGACTACCAGAACCATTTGTCCGATGTAATTAGGCAACTTCTGGAGGAGGACTGCATGGTGGACGTGACACTGGCCGCTGCAGGGGAACGCATCCATGCCCATCGCATAGTCCTCTGCGCCTGTAGCACTCTCTTTCGAGATGTTTTAAGTCAAGTAAACGAAGATCATCCGACAATAATATTGAGCGATATATCTGCGCAGGATATTAAGTCTATCATAGAGTTTACTTACCATGGCGAAGTGCGAGTTCCAGTGGAGAATTTCAATAGTTTATTGGACGCAGCACGTTCCTTAAAAATAAGCGGTCTCATCGAgATCGATAGGGTAGACGAGACTGACTCAGTTTCGAGCACAAAGGATTTTAACGATAATAATGAAGAGCCAATGACCGTAATCAGCGAAGCGGAGGATAATGTTATTAACCCACTGCAACACAGTTACGACGAGTTAGAAGATCAGCAAGAACAAAAAGTCATTGAAAATGCAACTATGAGTAAAAGAAAGAGGCGCAGGCGCGATACGACGAAAAGGGATTATAACGACGACATGCTAGCATCTGCGATAACCGACTTAAAGTTGGGGCAAACGTTAATAGAAGCTTCGACTAAGCATaatataccgcgttcgacgTTATACATGCGTGCCAAAGCGTTGGGTATACATTTCAACGCGTCACGAAACGAGTATCCAGCGGAATGTGTGAAAGCAGCTATAAACGCTGTAATCGGTGGAACAAGTTTGCAACATGCATCAGAAATGTTTAGCATACCCAAAACTGTACTATGGAGAAGGATTCAAAAAGAAGGCTACCAAATATTGCGTTCCGAAATGAGAAGGTCCTACGACTCTGACAAACGCGAGGCCGCAGTCAAGGCTTTGGAAAGGGGAGAGAATCTGACCAAAGTTGCGCTCGAATTCAAAATTCCAAAGACTACATTATTTAGGGACAAAGCTCGGTTGGTAGACGAGGGAAAACTGCCGCTTTCATTCTGGAAGAAGCGAAATTCCGAAAAcgagaaattaaagaaatctCGGTTAGAAGAAGCTGTCGCTGCTTGTAAAGGAGGGAAAATGTCACAAGCGGCGGCGGCGATGACTTATCATATTCCTAAGACGACGATATGGAGACGTCTTCAGCAAGACGGCAAGAAGTCGGAACGCCCGTTGAACTCAAGGAAACGACGAGTGTCGGACTCCAAGCATGGCGCAGAATCGAAAACACAAGACGGAGACGATTTCACTTTTTGCGAGGTTTCTTCGGAGATTCCTATAACTTATATAGACGAAAGTAGTATACCTGAGGATTCTGTGATAATATTAACGGCAGAAGATATGGACGGACTTAATTTGGAAGAAGGACGACAGATTATCGTTAATTCGGAATCGGTACAGGAATATGTTCCCTGTACTATAAGTATCGAAGAGAATTCCAATTACTCGCAGACGGAGAGTTAG
- Protein Sequence
- MSEAVGQHEINQSYCFKWNDYQNHLSDVIRQLLEEDCMVDVTLAAAGERIHAHRIVLCACSTLFRDVLSQVNEDHPTIILSDISAQDIKSIIEFTYHGEVRVPVENFNSLLDAARSLKISGLIEIDRVDETDSVSSTKDFNDNNEEPMTVISEAEDNVINPLQHSYDELEDQQEQKVIENATMSKRKRRRRDTTKRDYNDDMLASAITDLKLGQTLIEASTKHNIPRSTLYMRAKALGIHFNASRNEYPAECVKAAINAVIGGTSLQHASEMFSIPKTVLWRRIQKEGYQILRSEMRRSYDSDKREAAVKALERGENLTKVALEFKIPKTTLFRDKARLVDEGKLPLSFWKKRNSENEKLKKSRLEEAVAACKGGKMSQAAAAMTYHIPKTTIWRRLQQDGKKSERPLNSRKRRVSDSKHGAESKTQDGDDFTFCEVSSEIPITYIDESSIPEDSVIILTAEDMDGLNLEEGRQIIVNSESVQEYVPCTISIEENSNYSQTES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00118108;
- 90% Identity
- iTF_00087302; iTF_00087847; iTF_00087017; iTF_00088940; iTF_00085517; iTF_00085200; iTF_00088150; iTF_00086424; iTF_00088696; iTF_00084445; iTF_00084669;
- 80% Identity
- iTF_00086424;