Anig013287.1
Basic Information
- Insect
- Anaulacaspis nigra
- Gene Symbol
- MBD-R2
- Assembly
- GCA_030264675.1
- Location
- JARJDV010011052.1:8519-12129[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.2e-10 5.1e-07 29.1 0.0 5 71 485 544 481 550 0.87 2 2 0.75 1.8e+03 -1.5 0.0 47 73 623 654 620 658 0.77
Sequence Information
- Coding Sequence
- ATGGGTAAACGTAAATGCAGTGTGGAAGGATGCAAATCCGAATCGCATCTACCTGAACACATTGGTGTGACTTTCCACAAGATTCCGCCTAACCCAGAAATTCGACCCAAGTGGTTAAAAGAGTGTCATATTAGTGAAGACaggaaattgttatttgtttgttctcGACATTTCCTGCGCGCCGATTTCCGCAGTTTTAATGGCTCGAGGTATATGTTACGACAGGGCATTCTACCTTCGATTTTCCCATGGAACAAACACTTAAAAAAGAGTGAGAAAAACAAAGCTAAAGCCACAGATATTCCCGGCAAACGCATCAGGAAACAGAAATTGAATCCGGATTATGTCACAGGTGAAAGTAGGAAAAAGAAAACTGAACCTAAAACCAGTGAGAAAGTGCCAGAAGTAAGTGATGCCAAAAAGACATTGGAATCTGAGGGTAGTACATCTGAGGAAAGTGTGCCCCCTGTTTTGGAACCAGAGAATTTTGCTTTGCCCAAAGCTGACAATGATAACATACCAAAATTGGAACTATCCACAAAATCTGATGGGAATTTGGGACCATTCAAAAAGAGAAAAACCGAGGCcacaacaccaacaacatcaattatcaaatcaaaaattattgtgGAAGATAAATGCAGTCCATTGGAGATTAAAACACATGAAATCATGGAAAGAAGTAAGTTGAAAGAGAAGCACCATGATGACAATCAACCAACAACGCCAGTAAAATCCCTAAAAGCGTCTGATAAATCACTGGTGGATAGTCCAAAAACACCATCAACAAATGCTAAGTTATTTGAACCTCAAACGAGGATTGAAGCGCTCGACTTTAATCAAGCATGGACGCCTGCGACTGTTCTAGAAGTAGActatgaagaaaatgaaattttggttcattttgatttgtatagtaataaatatgatgaatgGATTGCAGTTAATAGCTCTTCAATACGATTTCCCAGGAAAGAAACTGCCGACGGAGAAAAACCCAACACTGAAGCACCACAAACAGTCGAGGTACTAAAATTTGAACAGGGAGATCGATGTGTTGCGTATTGGAcggaaaacaaaaagtttcCGGGATTTATTAAAGAGGTTATTGATCATGAAACGTATGTGGTCGAGTTTGATGACGGATATCTAAAAACCCTAAACGTCTCGAAGATAATGAAGGGCACAGCGTATAAACGATCCAAGAAGACGAAACAACACAGACGCATTGAAAATCGTAGATTAAATGTTCAATCTCTGTTCAAAAAACGTGTAAAATCAAGTAAATCTTTACCTTCCGTTCTGGGTAAGGGTGAGTCGACCGAATCGTCAACATCTCAAGATCCTGGATACATTTGGAGTGATAATTTATGGTATCCAACATTTGTGGGAGGCACTCCAATTGGTGTAGCATCGCATCTAAAGACGAAAAAGGGTAATAAGAGTACAGTTATTGTCAGCGATCCAAATTTACCTGAAGGATGGGAGAAACACGCAATGAAACGAGATGGAGGCAAGTGGAATTGCATAATTGTAACACCCGACGGTCGGAAACTCCGCTGTCGATCAGACATACAACGTTATGCTGCAGAAAATCCAGATTTCAAGATGGATGATTACTCTATCAATAGTTTTTTAACACCTCGACGCCACAAGCAACAATCACAAGTTGCTTCAACAAGTGCAAATCCAGATAAAACTGAACCTGATATAGAATCAACACCCCCGACCGCAGCGACGCCATCGAGAGTTGAACCACAACTGAAAATTCTGCAAGTAGATGGTGGTTTTCAATGCCCGATTGACGGATGCGGCAAGAACTTCCGGCGGGAAAATCTTGTTCAGATGCACGTTAAACATTACCACCCCGAATTCAAAAAGTATCTCGAAAGTACTCCGAATGTATTGGATCTTGTGTATCAACGCTTGCATGGAGACGATTTTGAATTGTCGCCCAGCCGTAGCAGTGGTGAATACACCAAGAAAACCTCTGCTCCAATTGACGAAATTACCaatacgaatgcgaatgaTGCATTGATATTCGAGCAAAAGAATagcgaaattaaaaagttattgacAAGTCCCTTGGACTGCTCCGAAGGTGGTTCGCAGAGTTCCACAGCGAGCACGAGTTTACCAGAGCGGAAACTTAAAGAAATATCAACAGATTCACCTACGGATCGAGGGCCTGATTTGAAAGCGTTGGCGGTTACGACCAAGAGTGGATTGAAAACAATACCACCGTTGAAAAAGATATTGGATGAAAGCGATAAGAAGGAATTGCCACGAAAGCGAAAAATTGAAGAGTTGAGTGGCGATTTCGAGGGGCAATCTAGTGATAGTGGATTGGTTGGTGAAAATGAATTCGTCatgcagcagccgccgccgattTTAGACCATATTATTGGTGAAGATGGTAAAGTCATCAAAATCGAGCACATGCGTAAGGAGGAAATCATCAATTGCACGTGCGGAATCACCGAGGAAGATGGTCTGATGATTCAGTGTGAAATTTGCATGTGTTGGCAGCATGCGCACTGCAATAATATCTATCGCGAGACGGAAGTGCCCGAGAAATATGTGTGCTATATTTGCCAACATCCGTACGGTCAGAGGActagtttgaaatatttccatgaTCAGGATTGGTTGAAGCATGGCGTCCTGCCGACGGGAAGTTACCATTACAGGGACGAAGAAGCCTGTCAAAAGCGCTTTGAGAATTTGCGCATGTCCCATGATTTGACTGGTGGATTGATAGAGTTGAAGGACTATCTGCATTCGTTGAAATTTAAAGGAAAAATTGGAGAGATGAAAAATCATCCAAAGTTGTACTTATGGTCTAAAGCTTGGGAAAAGTATAAGTTACCAGAGGAACGCAAGAAGGCTGTAGTCAAAGAGGAGCTTGATGAATCGAAAGAGAACGCGACCGAAGTTAAGGAAGAGACTGACGCGAATGATTTCTCGAATGTTCCACAACCCGAAGCGGCGATAGAAACCGCCGATTGCCGATTGAATTTGTTGGATCATATCAGCCATTGCCAGACGTTGATAGAGGACAGATTGGATTattttgaaagtaaaattaacgAACTCGTGCCAAATCCGCTGACGCCCAAGGATGAAACTGAATTCCTTCTGTGTACGTCAATGTTGGTTAAAGATCTTAGCACAATGAGGGAGTTTTCACAGTTTAGCACGTTCTGA
- Protein Sequence
- MGKRKCSVEGCKSESHLPEHIGVTFHKIPPNPEIRPKWLKECHISEDRKLLFVCSRHFLRADFRSFNGSRYMLRQGILPSIFPWNKHLKKSEKNKAKATDIPGKRIRKQKLNPDYVTGESRKKKTEPKTSEKVPEVSDAKKTLESEGSTSEESVPPVLEPENFALPKADNDNIPKLELSTKSDGNLGPFKKRKTEATTPTTSIIKSKIIVEDKCSPLEIKTHEIMERSKLKEKHHDDNQPTTPVKSLKASDKSLVDSPKTPSTNAKLFEPQTRIEALDFNQAWTPATVLEVDYEENEILVHFDLYSNKYDEWIAVNSSSIRFPRKETADGEKPNTEAPQTVEVLKFEQGDRCVAYWTENKKFPGFIKEVIDHETYVVEFDDGYLKTLNVSKIMKGTAYKRSKKTKQHRRIENRRLNVQSLFKKRVKSSKSLPSVLGKGESTESSTSQDPGYIWSDNLWYPTFVGGTPIGVASHLKTKKGNKSTVIVSDPNLPEGWEKHAMKRDGGKWNCIIVTPDGRKLRCRSDIQRYAAENPDFKMDDYSINSFLTPRRHKQQSQVASTSANPDKTEPDIESTPPTAATPSRVEPQLKILQVDGGFQCPIDGCGKNFRRENLVQMHVKHYHPEFKKYLESTPNVLDLVYQRLHGDDFELSPSRSSGEYTKKTSAPIDEITNTNANDALIFEQKNSEIKKLLTSPLDCSEGGSQSSTASTSLPERKLKEISTDSPTDRGPDLKALAVTTKSGLKTIPPLKKILDESDKKELPRKRKIEELSGDFEGQSSDSGLVGENEFVMQQPPPILDHIIGEDGKVIKIEHMRKEEIINCTCGITEEDGLMIQCEICMCWQHAHCNNIYRETEVPEKYVCYICQHPYGQRTSLKYFHDQDWLKHGVLPTGSYHYRDEEACQKRFENLRMSHDLTGGLIELKDYLHSLKFKGKIGEMKNHPKLYLWSKAWEKYKLPEERKKAVVKEELDESKENATEVKEETDANDFSNVPQPEAAIETADCRLNLLDHISHCQTLIEDRLDYFESKINELVPNPLTPKDETEFLLCTSMLVKDLSTMREFSQFSTF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00049274;
- 90% Identity
- iTF_00083951;
- 80% Identity
- iTF_00083951;