Acur008177.2
Basic Information
- Insect
- Aleochara curtula
- Gene Symbol
- MBD-R2
- Assembly
- GCA_963978815.1
- Location
- OZ022219.1:10866500-10870152[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.1e-10 4.2e-07 29.3 0.0 5 71 487 546 483 556 0.85 2 2 0.86 1.7e+03 -1.5 0.0 47 73 625 656 622 660 0.77
Sequence Information
- Coding Sequence
- ATGGGTAAACGTAAATGCAGTGTGGATGGATGCAAATCTGAATCGCATCTCCCGGAACACATTGGTGTGACTTTTCACAAGGTTCCTCCAAACCCCGAAATTCGACCCAAGTGGTTAAAAGAGTGTCATATTAGTGAAGATAGGAAATTATTGTATGTTTGCTCTCGGCACTTTTTACGCGCAGATTTTCGCAGTTTTAATGGCTCGAAATACATGTTGCGGCAGGGTATTTTACCCTCAATCTTCCCATggaataaacatttaaaaaagagTGAAAAAACCAAAGCTAAAACCACAGACCTTCTTGGTAAACGTATCAGAAAGCAGAAACTCAATCCAGATTATGTCACTGGTGAAAGCAGGAAGAAGAAAAGTGAACCAAAAGCAAGTGAGAAAGTGCCAGATGTCAGTGATGGTAAAAAGACACAGGAATCTGAAGAAAGCACATCCGAAGAAAGCATGCCCCCTGTTTTGGAACCAGAGAATTTTGGGTTACCAAAGGTTGACAATGATAACATTCCAAAGTTGGAACTATCAACAAAATCTGATGGGAATTTGGGTCCCTTCAAAAAGAGGAAAACAGAACcagcaacaccaacaacatcaataattaaatcaaaaatcattGTTGAAGACAAGTGCAGTCCATTGGAGATTAAAACACATGAAATCATGGAGAGAAGTAAgctgaaagaaaaacaaattgatgaaaatcaacaatctCCAACAACACCAGTAAAATCCCTAAAAACATCTGAGAAGGCAGTGATGGATAGTCCTAAAACACCATCAACACATTCTAAATTATTTGAGCCTCAAACCAGGATTGAAGCTCTGGATTTTAATCAATCATGGAGACCTGCAATTATTCTAGAAGTGGActatgaagaaaatgaagtgttGGTTCATTTCGATTCATACAGTAATAAATATGATGAGTGGATTGCAATTAACAGTTCTTCAATAAGATTCCCCAAGAAAGAGACAGCTGATGGAGAAAAACCAATCAATGATCCACCAAAAGAACCagagatattaaaatttgaacaaggAGATAGATGTAATGCGTATTGGACAGAACACAAAAAGTTTCCAGGATTTATTAAAGAGGTTATTGATCATGAAACGTATGTGGTAGAGTTTGATGACGGATACCTAAAAACGTTAAACGTCTCAAAGATAATGAAGGGCACTGCATATAAACGATCCAAGAAGACAAAACAACACAGGCGGATTGAAAGTCGCAGACTAAATGTTCAAGGGCTCTTTAAAAAACGTGtaaaatctaataaatcaacaagTTCCTCTTTGGATAAGACTACGTCGAGTGAGTCGTTAACATCGCAGGAATCAGGATATATTTGGAATGATAATTTATGGTATCCAACatttGTGGGAGGAACTCCAGTTGGTGTACCATCACACATAAAGACAAAAAAGGGTAATAAGAGTACAATTATTGTCAGTGATCCAAATTTGCCTGAAGGCTGGGAGAAGCATGCAATGAAACGTGAGGCAGGCAAGTGGAACTGCATTATTGTTACTCCTGATGGCCGAAAACTACGCTGCCGATCGGACATTCAACGTTACGCAGCTGAAAATCCTGATTTCAAGATTGATGATTATTCTATCAACAGTTTTCTGATACCTCGTCGTATCAAGCAACAACCACAAGTTGCTTCGACCAGTGCAAGTCAAGAAAAATCTGAGCCCGATGTAGAAACAACACCACCATGCGCAGCGACACCGTCAAGAATTGAACCGCAGTTGAAAATTTTACAGGTTGATGGGGGATTTCAATGTCCTATTGAAGGGTGCGGCAAGAATTTCCGGCGGGAGAACCTCGTACAGATGCATGTCAAACATTATCATCCCGAATTCAAGAAATATCTCGAAAGCACTCCGAATGTCTTGGATCTGGTCTATCAACGATTGCATGGAGACGACTTTGAATTATCGCCCAGTCGAAGCAGTGGTGAATACAGTAAGAAAACCTCAGCTCCAATTGACGAAATTACGAACACTAATGCGAATGATGCATTGATATTTGAACAAAAGAATAgcgaaattaaaaagttattaaccaGCCCGTTGGATTGTTCGGAAGGTGGTTCACAGAGTTCGACAGCAAGCACAAGTTTGCCAGAACGTAAACTTAAAGAACTCTCAACAGATTCACCAACTGATCGAGGGCCTGACTTGAAAGCGTTGGCAGTTACAACCAAGAGTGGATTGAAAACGATCCCGCCGCTGAAAAAGGTCGTGGATGATAGCGATAAGAAGGATTTGCCACGAAAGCGAAAAATTGAAGAGTTGGGTGCGGATTTCGAGGGGCAATCTAGTGATAGTGGATTGCTTGGCGAAAATGAATTTGTAATGCAGCAACCACAGCCAACTTTAGACCACATTATTGGCGAAGatgGTAAAGTCATCAAAATCGAGCACATGCGTAAGGAGGAAATCATTAATTGCACTTGCGGGATCACCGAAGAGGACGGTCTGATGATTCAGTGCGAAATTTGCATGTGTTGGCAGCATGcgcattgcaataatatttatcgtGAAGTAGAAGTGCCCGAGAAATATGTGTGCTATATTTGCCAACATCCGTATGGCCAAAGGActagtttgaaatatttccatGATCAGGACTGGTTGAAGCATGGAGTTTTACCCACAGGAAGTTATCATTACAAGGATGAAGAAGTCTACCAAAAGCGCTTTGAGAATTTGCGCGTGTCTCATGATTTGACCGGTGGTCTTATAGAGTTGAAGGACTACCTGCATTCGTTGAAATATAAGGCAAAAATTGGAGAAATGAAAAATCATCCAAAATTGTATTTGTGGTCTAAACCTTGGGAAAAGTATGATTTGCCCGAGGAACGTAACAAGACTACAGTCAAAAAGGAACCTGAAGAACCAAAGGAGAATACGGAGGAAATTAAGGTAGAGAATGACGTAAATGAATTCTCGAATATTCCGCAACCGGAGGCAGCAATAGAAACGGCTGATTGCCGATTGAATCTGTTGGATCATATCAGTCATTGTCAGACGTTGATAGAAAGCCGATTGGATTactttgaaagtaaaattaacgaACTTGTGCCAAATCCGCTAACGACGAAAGACGAAAATGATTTTCTTCTCAGTACGTCAATGTTGGTTAAAGATCTCGGCACAATGAGGGAGTTTTCACAGTTTAACACGTTTTGA
- Protein Sequence
- MGKRKCSVDGCKSESHLPEHIGVTFHKVPPNPEIRPKWLKECHISEDRKLLYVCSRHFLRADFRSFNGSKYMLRQGILPSIFPWNKHLKKSEKTKAKTTDLLGKRIRKQKLNPDYVTGESRKKKSEPKASEKVPDVSDGKKTQESEESTSEESMPPVLEPENFGLPKVDNDNIPKLELSTKSDGNLGPFKKRKTEPATPTTSIIKSKIIVEDKCSPLEIKTHEIMERSKLKEKQIDENQQSPTTPVKSLKTSEKAVMDSPKTPSTHSKLFEPQTRIEALDFNQSWRPAIILEVDYEENEVLVHFDSYSNKYDEWIAINSSSIRFPKKETADGEKPINDPPKEPEILKFEQGDRCNAYWTEHKKFPGFIKEVIDHETYVVEFDDGYLKTLNVSKIMKGTAYKRSKKTKQHRRIESRRLNVQGLFKKRVKSNKSTSSSLDKTTSSESLTSQESGYIWNDNLWYPTFVGGTPVGVPSHIKTKKGNKSTIIVSDPNLPEGWEKHAMKREAGKWNCIIVTPDGRKLRCRSDIQRYAAENPDFKIDDYSINSFLIPRRIKQQPQVASTSASQEKSEPDVETTPPCAATPSRIEPQLKILQVDGGFQCPIEGCGKNFRRENLVQMHVKHYHPEFKKYLESTPNVLDLVYQRLHGDDFELSPSRSSGEYSKKTSAPIDEITNTNANDALIFEQKNSEIKKLLTSPLDCSEGGSQSSTASTSLPERKLKELSTDSPTDRGPDLKALAVTTKSGLKTIPPLKKVVDDSDKKDLPRKRKIEELGADFEGQSSDSGLLGENEFVMQQPQPTLDHIIGEDGKVIKIEHMRKEEIINCTCGITEEDGLMIQCEICMCWQHAHCNNIYREVEVPEKYVCYICQHPYGQRTSLKYFHDQDWLKHGVLPTGSYHYKDEEVYQKRFENLRVSHDLTGGLIELKDYLHSLKYKAKIGEMKNHPKLYLWSKPWEKYDLPEERNKTTVKKEPEEPKENTEEIKVENDVNEFSNIPQPEAAIETADCRLNLLDHISHCQTLIESRLDYFESKINELVPNPLTTKDENDFLLSTSMLVKDLGTMREFSQFNTF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00049319; iTF_00083951; iTF_00083906;
- 90% Identity
- iTF_00049319;
- 80% Identity
- iTF_00049319;