Aobl002816.1
Basic Information
- Insect
- Anastrepha obliqua
- Gene Symbol
- lrrfip2
- Assembly
- GCA_027943255.1
- Location
- JAPTHQ010000312.1:894406-915147[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.12 5.9e+03 -2.4 0.6 60 180 45 65 20 112 0.52 2 3 2.8e-116 1.3e-111 374.1 30.5 1 299 265 559 265 560 0.91 3 3 0.11 5.4e+03 -2.3 4.1 220 244 588 612 564 633 0.47
Sequence Information
- Coding Sequence
- ATGTCAGATACTCAGAACAACAATGTCGTCCTGTGTAGTGTTGGCACAGAACTAATTCATAATAGCACAGAAATTAATGATAATTGCGTGGCTTCAGACTCATTCAATAAGGAAAAACACCATAACAACAACGTTCATAGCTTAAACAAAAATTCTACAAGTATTAGTAGTAATGATGAAGTCATCGAGGAGGGATTCGACTATAGCGAAACCGACCTGTTAGACGAGTTGAATGCCAGCGATGAAAACGACGACACCAACAGCAATGTAACAAATGAGAACTGTCAAAAAAATTGCAATCAACATCTCCCAATCATACGCGACTCTAACAATGAGAAGGGAGAAGAAACAAGTAATATCAGCGCAACTCCTCTTATTGATATTACAGACGATACACATTCTCATAACATTGTAACTTCGCCGACCACCGTTGCGTGCGTCGACAGTGATTGTGTGCCAATTGCAAGTGCTGATAATGCGACTACCGCTGCAAGTGATAAGCACAAATTCACACCGCCTAACTTGGATCTGCGGCTCACTGACGAAGCGAAAGCAACAATAAGTGCTGTTGACTCATACTGTCCTATAACACCACGGCAAATAGTTGATGTTGATGCTGAGCCTAACCAATTGTTGAGACGTAATTCGACAACGCAGACAGAAGTTAGCAATGATGATGTTGCTGGTGTTGGTGTTGGCAACAACAACTCTCGTAATGATGAAGGTTATTATTATGCTGATGAGCCTGAAGATGAATTGATTGTTCAGTTCCTGGGAGAAGCCAATCGTATTGCTGAGGCCCGTTTAGCTGCCCGCCGGCAAGCACGCGCTGAGGCACGTGAAATACGAATGCGAGAATTAGAACGCCAACAAAAGGAACAGGAACAAAATGCAGATCGCGTTTTTGACATGCACAATGTATCCGGCATTGATCCACTATCGCGATCGCGACTTGCAACAGGTGTGGGAAGTTCGCCTTTGGGTGCGGTGCTTAACAGCACACGCGTTAGCTCAATGTCATCACGACGCAGCAGTGAAGATTCACTGGAAGAGGAAGGACGCAGCCTGCGAGATATACGACATGAGCTTAAGGATGTTGAGGAGAGATTTCGGAAGGCAATGATAGCCAATGCGCAATTGGATAATGAACGTGCCTCACAAACGTATCAAATACAACTGTTGAAGGACAAACTGGAAGAAGTGGAAGAATCATATGCGCAACTTCAGCGAGAATTCAAAGAGAAATCACGTGATTGCAATGCGCTGAAAAGAAATTTAGATAAATTAAGTGAAGAACTTAAACTGGTGCAAGGTCAACTCACTGAACGCGATAAACTTATCGCCGATCAGGGTTTAGTTATTGTGGCCATAGAGAATGAAGAGGGTACTGATGCAAAACGTGCTCTAGTCAGTGTAGAGAATGCTCAGCTGTTAGGTTCAGTGCAAGGTTCTTTGGATGTGCGACTGAAAAAATTCAGTGAGGAAAAGCAACAGCTTTTGGCAGAAGTGCAGAAACTACAGGAAGCATTAGAGAACTACAAGAGTCAAGGCAAAGGGCGATCGAATTCGCTTAACGGACCATCAGGGTCTGATGAGGACTACGAAGCACAAAGAGAGGCGAACAAAATAATATCAGACTACAAGTATAAACTGCAGAAGGCTGAACAAGAGATCGCCAGCTTGCAAGCCAGTTTGGCACGTTCAGAAACGCAAGTCATACGTTATAAAAGCACAGCTGAGGCGGCTGAAAAGGCAGAAGCGGAACTGAAAATTGAGCGGAGAAAATTGCAAAGAGAGAATCGTGAGGCCATGGAACGTCTGGAAGAGTTGGAAACTTCAAATAATCACCTGCTAAAGCGACTGGACAAACTAAAGAATGCTAAAAGCGCATTACTGAAGGACCTTTGA
- Protein Sequence
- MSDTQNNNVVLCSVGTELIHNSTEINDNCVASDSFNKEKHHNNNVHSLNKNSTSISSNDEVIEEGFDYSETDLLDELNASDENDDTNSNVTNENCQKNCNQHLPIIRDSNNEKGEETSNISATPLIDITDDTHSHNIVTSPTTVACVDSDCVPIASADNATTAASDKHKFTPPNLDLRLTDEAKATISAVDSYCPITPRQIVDVDAEPNQLLRRNSTTQTEVSNDDVAGVGVGNNNSRNDEGYYYADEPEDELIVQFLGEANRIAEARLAARRQARAEAREIRMRELERQQKEQEQNADRVFDMHNVSGIDPLSRSRLATGVGSSPLGAVLNSTRVSSMSSRRSSEDSLEEEGRSLRDIRHELKDVEERFRKAMIANAQLDNERASQTYQIQLLKDKLEEVEESYAQLQREFKEKSRDCNALKRNLDKLSEELKLVQGQLTERDKLIADQGLVIVAIENEEGTDAKRALVSVENAQLLGSVQGSLDVRLKKFSEEKQQLLAEVQKLQEALENYKSQGKGRSNSLNGPSGSDEDYEAQREANKIISDYKYKLQKAEQEIASLQASLARSETQVIRYKSTAEAAEKAEAELKIERRKLQRENREAMERLEELETSNNHLLKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00082128;
- 90% Identity
- iTF_00082128;
- 80% Identity
- -