Alud040815.1
Basic Information
- Insect
- Anastrepha ludens
- Gene Symbol
- lrrfip2
- Assembly
- GCA_028408465.1
- Location
- JAPVRI010139503.1:6788-21704[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.17 8.6e+03 -2.8 0.8 58 180 43 65 20 102 0.50 2 3 2.8e-116 1.4e-111 374.1 30.5 1 299 264 558 264 559 0.91 3 3 0.11 5.8e+03 -2.3 4.1 220 244 587 611 563 632 0.47
Sequence Information
- Coding Sequence
- ATGTCAGATACTCAGAACAGCAATGTCGTCCTGTGTAGTGTTGGCACAGAACTAATTCATAATAGCACAGAAATTAATGATAATTGCGTGGCTTCAGACTCATTCAATAAGGAAAAACACCATAACAACAACGTTCATAgcttaaacaaaaattctacaAGTATTAGTAGTAATGATGAAGTCATCGAGGAGGGATTCGACTATAGCGAAACCGACCTGTTAGACGAGTTGAATGCCAGCGATGAAAACGACGACACCAACAGCAATGTTACAAATGagaactgtcaaaaaaattgcaatcaaCGTCTTCCAATCATACGCGACTCTCACAATGAGAAGGGAGAAGAAACAAGTAATATCAGCGCAACTCCTCTTATTGATATTACAGACGATACACATTCTCATAACATCGTAACTTCGCCAACCACCATTGCGTGCGTCGACAGTGATTGTGTGCCAATTGCAAGTGCTGATAATGCGACTACCGCTGCAAGTGATAAGCACAAATTCACACCGCCTAACTTGGATCTGCGGCTCACTGACGAAGCGAAAACAACAATAAGTGCTGTTGACTCATACTGTCCTATAACACCACGGCAAATAGTTGATGTTGATGCTGAGCCTAACCAATTGTTGAGACGTAATTCGACAACACAGACAGAAGTTAGCAATGATGTTGCTGGTGTTGGTGTTGGCAACAACAACTCTCGTAATGATGAAGGTTATTATTATGCTGATGAGCCTGAAGATGAATTGATTGTTCAGTTCCTGGGAGAAGCCAATCGTATTGCTGAGGCCCGTTTGGCTGCCCGCCGGCAAGCACGCGCTGAGGCACGTGAAATACGAATGCGAGAATTAGAACGCCAACAAAAGGAACAGGAACAAAATGCAGATCGCGTTTTTGACATGCACAATGTATCCGGCATTGATCCACTATCGCGATCGCGACTTGCAACAGGTGTGGGAAGTTCGCCATTGGGTGCGGTGCTTAACAGCACACGCGTTAGCTCAATGTCATCACGACGCAGCAGTGAAGATTCACTGGAAGAGGAAGGACGCAGCCTGCGAGATATACGACATGAGCTTAAGGATGTTGAGGAGAGATTTCGGAAGGCAATGATAGCCAATGCGCAATTGGATAATGAACGTGCCTCACAAACGTATCAAATACAACTGTTGAAGGACAAACTGGAAGAAGTGGAAGAATCATATGCGCAACTTCAGCGAGAATTCAAAGAGAAATCACGTGATTGCAATGCGCTGAAAAGAAATTTAGATAAATTAAGTGAAGAACTTAAACTGGTGCAAGGTCAACTCACTGAACGCGATAAACTTATCGCCGATCAGGGTTTAGTTATTGTGGCCATAGAGAATGAAGAGGGTACCGATGCAAAACGTGCTCTAGTCAGTGTAGAGAATGCTCAGCTGTTAGGTTCAGTGCAAGGTTCTTTGGATGTGCGACTGAAAAAATTCAGTGAGGAAAAGCAACAGCTTTTGGCAGAAGTGCAGAAACTACAGGAAGCATTAGAGAACTACAAGAGTCAAGGCAAAGGGCGATCGAATTCGCTTAACGGACCATCAGGGTCTGATGAGGACTACGAGGCACAAAGAGAGGCGAACAAAATAATATCAGACTACAAGTATAAACTGCAGAAGGCTGAACAAGAGATCGCCAGCTTGCAAGCCAGTTTGGCACGTTCAGAAACGCAAGTCATACGTTATAAAAGCACAGCTGAGGCGGCTGAAAAGGCAGAAGCGGAACTTAAAATTGAGCGGAGAAAATTGCAAAGAGAGAATCGTGAGGCCATGGAACGTCTGGAAGAGTTGGAAACTTCAAATAATCACCTGCTAAAGCGACTGGATAAACTAAAGAATGCTAAAAGCGCATTACTGAAGGACCTTTGA
- Protein Sequence
- MSDTQNSNVVLCSVGTELIHNSTEINDNCVASDSFNKEKHHNNNVHSLNKNSTSISSNDEVIEEGFDYSETDLLDELNASDENDDTNSNVTNENCQKNCNQRLPIIRDSHNEKGEETSNISATPLIDITDDTHSHNIVTSPTTIACVDSDCVPIASADNATTAASDKHKFTPPNLDLRLTDEAKTTISAVDSYCPITPRQIVDVDAEPNQLLRRNSTTQTEVSNDVAGVGVGNNNSRNDEGYYYADEPEDELIVQFLGEANRIAEARLAARRQARAEAREIRMRELERQQKEQEQNADRVFDMHNVSGIDPLSRSRLATGVGSSPLGAVLNSTRVSSMSSRRSSEDSLEEEGRSLRDIRHELKDVEERFRKAMIANAQLDNERASQTYQIQLLKDKLEEVEESYAQLQREFKEKSRDCNALKRNLDKLSEELKLVQGQLTERDKLIADQGLVIVAIENEEGTDAKRALVSVENAQLLGSVQGSLDVRLKKFSEEKQQLLAEVQKLQEALENYKSQGKGRSNSLNGPSGSDEDYEAQREANKIISDYKYKLQKAEQEIASLQASLARSETQVIRYKSTAEAAEKAEAELKIERRKLQRENREAMERLEELETSNNHLLKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01189423; iTF_00082940;
- 90% Identity
- iTF_00082940;
- 80% Identity
- -