Alud019926.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Anastrepha ludens
Gene Symbol
sip1
Assembly
GCA_028408465.1
Location
JAPVRI010086777.1:1114-3907[+]

Transcription Factor Domain

TF Family
GCFC
Domain
GCFC domain
PFAM
PF07842
TF Group
Unclassified Structure
Description
This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 5.1e-93 1.3e-88 298.7 17.0 1 275 420 689 420 689 0.98
2 2 0.11 2.8e+03 -0.9 0.0 157 190 701 733 694 745 0.62

Sequence Information

Coding Sequence
ATGTCTGATAATGAATACGAGCGGTTCGAGGTAACAGATTACGATTTAGAAAATGAATTTAATCCGGGGCGTCGTAGAAATCTTTCAAAGAACCAGCAAATTTATGGCATTTGGGCCGATGATAGTGATAATGACAGCCCCGAAGAGTCCAGCAACCGGCGCGGACGCCGTGGGCGCGCTGGACTTGGCGGCGGTGGTGGCAGTAAATCGAAAGACTACTCGGCACCGGTAAGTTTTGTCGCTGGTGGCATACAACAATCGGGCAAAAAGGATAAAAAGGCGCGTAAAACCAGCACAGACCAACGAATCACCGATGAGGAAAGTGATGAAGAAAATGCGCGTCCATCTTTTGGTCGCAAACAAGTTGAGGCGGATGATGGTGGTACCAGTGATTCGGCGACCAGTTCCGATGAGGAACGCACGCAACGGAAACGTGCAGAGGCAGGCCATCAGCAGCGGAGTAGTAGTGCGCGTCATAGTAGTAATCCAAATGTGGGCGCTTGGGAACAGCACACGCGCGGCATTGGCGCGAAATTGCTACTGCAGATGGGCTATCAACCAGGCAAGGGTTTGGGCAAAGACTTGCAAGGTATATCACAACCAGTGCAGGCGCATATGCGTAAAGGGCGCGGTGCGATTGGTGCTTATGGGCCAGAGGTTGCTGCTAGTGTTGGTGGAAAGGGGCCAGTGGCGAAAGAAGGTGAAGATGTGCGTGAGGCCaaagaatttaaagaaaaacttaacaaGTGGAAAAAATGCGGCGACGCACGTCAAGACAAAGGTAAACGTTACTACTACCGTTCGGTCGAGGAGGTGATTGAGAAGGGGAAAAAAGGGAGTTTCGCGCTTTCAGAAAATTTAAGcaaaaaaattggaaacgtTCCGGTTATAGATATGACTGGACCTGAAAAGCGCGTTCTTAGCGGCTATCATGCTCTGGGACAAACGAAGGTGGTCGACGAAGAACTCTATGACTTGGAACAGGCTGTCGCAGGCAGCAGCATTACCTCAAAGAAAGGCAGCACCTTTGCGCTGCCCGAACTGATGCACAATCTACAGCTTATTGTAAACCTCTGCGAACAGGACATTATAACGCTCGACAAAGCAGAGCGTGAGGCTACAGATCGTCAGGCAGCGTTAGAACATGAGCGCAAAAATCTTGAAGAAATCGTGCATTTGGAGAAGAATCACATCGATACGCTGGAACAAGCCTTACAGCTAGTAGAGGAGCTGACCACGAGCAATGAACTGTTGACACTACAACGTGCCGAGCAAATTTTTGTCAAACTGCAGCAAAATTATGCGGCCGAGTATAAAGAATTTGCACTTGGCGATCTGGCCGCTGGTGTTATTGCACCGCTTGTTAAAATAACACTGGAAGATTGGAAACCACTCGAACAGCCGACGCAAAATGTTGAGCTGATCAAGAAGTGGCGCGGCATATTGGAAATGAACGTTGATCCGCAAAACGAGTCGCGAAATATTTTCGATCCTTACTCCTCGCTTGTATGGGCAGGTGTTATACCGAGTTTTCGCGCATGCGCTGCCTCCTGGAATCCGAAATTGCATCAACCTATGGCTGCACTACTCGATTGTTGGGCGCCACTATTCCCCACCTGGATACTGGACTCTGTGCTCGAGCAGCTAGTGCTGCCGCAGCTGAGCAACGGTGTGCGCGATTGGGATCCGCTCACGGACACCGTACCCATACACATTTGGATATTGCCGTGGAATAATATATTGGGTCATAAAATGGAGGAGTTCATCTTTCCTACGATACGCGAAAAATTGGCAACGGCTTTGCAGGCGTGGATGCCGCAAGATCGTTCAGCGCGCGCAATGCTCACGCCCTGGAAGGGTGCATTCAATGACATCGAAATGCAGCGTTTCTTGTCACAACACATCATACCGAAACTGCAATTGGTACTGAATGAATTCATTATAAATCCATTGCAACAACAACTCGAGTTGTGGAATCAGGTGTGGGAGTGGCATGAGCTGATACCCACACATCAAATGGCACAGCTGCTCGATAAATATTTCTTTCCCAAATGGATGCAAGTGTTGGTGTTGTGGCTCAATCAATCGCCCGACTATGCAGAGATCTCGCGTTGGTATACCGGCTGGAAGAGCATGCTAACCGAGGACATGTTGCGTGAACCCTCGATCAAAGAGCATTTGCGGCGTGCGCTTGAGATGATGCATCGCGCGACCGACGTACTAGCACCAGGACTTGCTTCAATACCAACACCCATAATGACAGCGAcgccaccaccaccgccgcctCCAACTATGTTGGATCTGCAAATGGTAGCACCAGCGCAATTGGAATTCAAGGAATTGGTCTCGCAGAAGTGCGCCGAGCGAGGTATACTTTTTGCGCCATTGCCAGGACGAAGGGAGTTGGGCAAACAGGTTTACCGCGTCGGCAAGTTATACTGTTATATTGATCGCAATGTTTGTATGCTAAGCGACAACAGCATGAAAAACTGGTTGCCCTCATCTGTGCAGCAGCTATTGGATCGAGCCATGTAa
Protein Sequence
MSDNEYERFEVTDYDLENEFNPGRRRNLSKNQQIYGIWADDSDNDSPEESSNRRGRRGRAGLGGGGGSKSKDYSAPVSFVAGGIQQSGKKDKKARKTSTDQRITDEESDEENARPSFGRKQVEADDGGTSDSATSSDEERTQRKRAEAGHQQRSSSARHSSNPNVGAWEQHTRGIGAKLLLQMGYQPGKGLGKDLQGISQPVQAHMRKGRGAIGAYGPEVAASVGGKGPVAKEGEDVREAKEFKEKLNKWKKCGDARQDKGKRYYYRSVEEVIEKGKKGSFALSENLSKKIGNVPVIDMTGPEKRVLSGYHALGQTKVVDEELYDLEQAVAGSSITSKKGSTFALPELMHNLQLIVNLCEQDIITLDKAEREATDRQAALEHERKNLEEIVHLEKNHIDTLEQALQLVEELTTSNELLTLQRAEQIFVKLQQNYAAEYKEFALGDLAAGVIAPLVKITLEDWKPLEQPTQNVELIKKWRGILEMNVDPQNESRNIFDPYSSLVWAGVIPSFRACAASWNPKLHQPMAALLDCWAPLFPTWILDSVLEQLVLPQLSNGVRDWDPLTDTVPIHIWILPWNNILGHKMEEFIFPTIREKLATALQAWMPQDRSARAMLTPWKGAFNDIEMQRFLSQHIIPKLQLVLNEFIINPLQQQLELWNQVWEWHELIPTHQMAQLLDKYFFPKWMQVLVLWLNQSPDYAEISRWYTGWKSMLTEDMLREPSIKEHLRRALEMMHRATDVLAPGLASIPTPIMTATPPPPPPPTMLDLQMVAPAQLEFKELVSQKCAERGILFAPLPGRRELGKQVYRVGKLYCYIDRNVCMLSDNSMKNWLPSSVQQLLDRAM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00081221;
90% Identity
iTF_00081221;
80% Identity
-