Basic Information

Gene Symbol
-
Assembly
GCA_963576865.1
Location
OY756398.1:17063972-17075271[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 0.28 29 6.5 0.1 3 23 116 136 114 136 0.96
2 17 0.023 2.4 9.9 0.1 2 23 140 162 139 162 0.88
3 17 0.11 12 7.7 2.1 2 23 370 392 369 392 0.96
4 17 0.033 3.4 9.4 0.0 1 21 400 420 400 421 0.94
5 17 0.021 2.2 10.0 1.5 3 23 432 452 431 452 0.97
6 17 0.62 65 5.4 0.7 1 23 468 491 468 491 0.91
7 17 0.015 1.5 10.5 1.3 1 23 500 523 500 523 0.91
8 17 0.23 24 6.8 0.5 2 23 602 624 602 624 0.89
9 17 1.1e-05 0.0011 20.3 1.6 1 23 658 680 658 680 0.98
10 17 8.8e-06 0.00091 20.6 1.6 1 23 687 709 687 709 0.98
11 17 9.8e-05 0.01 17.3 2.3 1 23 714 736 714 736 0.96
12 17 0.00062 0.064 14.8 0.5 1 23 742 764 742 764 0.98
13 17 3.5e-05 0.0037 18.7 1.1 1 23 770 792 770 792 0.94
14 17 7.1e-05 0.0073 17.8 2.8 2 23 799 820 799 820 0.98
15 17 0.00034 0.035 15.7 0.5 2 23 829 851 828 851 0.97
16 17 0.00048 0.05 15.2 0.1 1 23 856 878 856 878 0.98
17 17 0.0012 0.12 14.0 1.6 1 23 884 907 884 907 0.98

Sequence Information

Coding Sequence
ATGTCTTCAGATGAATCTGACGACGAACCCTTATCGGTGTTAGCGGCTGCAAAAAGGTTGAATCCGGAGAACTTCGAAGGGCTCGAAGAAACAACAATCGAGGTGGTCTCTCCATcaaaaaagaagagaaaaaagtaCCAATTAGAtgacaatgtttttattactatcaaGTTACGTCCTCCAAACATACGTGGCCCGAAGGTAGTTGAAAGACCTACAGATGTGTGGATGTACATTAAGGACCTGAATCCTACTGGGCCATATAGCTGCTTACTTTGCTCGGAGTGGTTCATAAACAGGtctaaagtaattttgcactatGTGCTCAACCATAAGAAAGATTTCTGCGGAATCTGCAGATATTTTGTGGCAGAAAGAGATGACTGGCAAGCCCATATGAAGTTTCACACACCTTGGCCATGCTCGCAATGTTCTGAGAGTTTTGTTACTGAGGGAGAGTGGAGGAAGCACTTCAGTGCTGCACACAATCTGGTCCACTGTCGTCTTTGTCACTTTAGAACCACAGATGATGAACATTACGAAAAACACTTGCATGATAAACACAACGTAACAAATGCAGCCAGTAAAAATGCAGATAGCCTCTGGGAAGTAGAGTATGAAGGCTGCCCAAATTTTCTATGCTTACTGTGTTCAAAAGGAGATATTTTGTCCACCACATTTTTTAATCATTACATGGGCTACCACCATTTCACACTCAAGTGTATCACGAACATAATATCTGGCACTGATCCGCCTTTTACTGTAGATGGTGCTAATGTTAGCACTGATTTTGTTAGTGaccagtttaaaataaaaactggctATCTGGACCTAGAGAAAAAACCGGAAAATGAAGGTGAATCAGTTGTAAAGCAGGAAATCTTAAGTGATACTGAGAATAATGATGAAAACAATGAGAAGGATAGTATTGTAGAAACTTACAAAGGCGATGAAGATTTTGATGTCACATTAATGGAGTTGATTGTGTTGCAAAAGTGTTACTTTGACTATGTAAATTATACGCTTAACCAGATAAATTCGAACAATGTACCTGAGGACTCTGGTATAGACTACAAAAATGCAAATGACGATCTCGAATTGGATGTTGAATGTGGCCTTTGCAAGACATGTGTTACTTCAGTGCAGACTTTTTCAACGCACATGCGTAAGATGCATTCGGTTAAATCCGTTCCAATTTACTCATGTAGAGTTTGTGCTACTACATTTGATAATCTTGCTGAGCTTGAAACTCATGTAATGGAAGAAATGGGCGAGTTTGAGGACTTGTGGTTATGTCAGTTTTGTGACAAGGAGTTTGATAGTAGGGAGACTACAAGAAAGCATTTGAATGATCATTTGGATGGTATGGAGTATGACAACTGTTTCAGTCCACACCTTGGCTTTAAATGCAAATACTGCCCTACTTTGTTTTGGAATGAGACAGATAGAGAAACACATCAAATAAGAGTGCACTATAACAAGTTTAACGAAGATTTCTATAAGTGTGAAAGTTGTTCAGAGATATTTAGTGATAAGGTTTGGTTCATACATCACTATGTTGAGAAACATCAGACAGGACAGGAGGTCTTTTTCCTAGTCAAATGCTGCGTGTGTTGCCTCGTGCTGCCCACTGTTGAAGATATGCGGGCACATTTTGAGCAGAACCATAGTGAAGCTAGGAAGATCTTCTGTTCCTTGGGCGCATGTGTGTATAAACCACTGAGCCAGAGAAAGTCATTTAAATTGCATGTAAAGACAGTCCACGCGTCGGAGGGCCCTAAAAAGGCGGCGTGCGTGGACGGTAGCTGCTCGATCTGCGGCCGCGAGTTcggcagcgcgcgcgcgtgcagCACGCACATGGCGCAGGTGCACGGCGCGCGCAAGTTCAAGTGCAAGCTGTGCCGCGACGTGCTGCACACGGTGGACGAGAGGAAACTCCACTACCTGATCCGGCACCCAGGGAAGCACCCGTACGAGTGCACGGAGTGCGGCAAGTCGTTTCAGTACAAGTCCTCGCTCTACATGCACAAGCAGGTGCACGCGCCCAACAAGCCTACCTTCTCCTGCACTTATTGCGGGAAAGTGTTTATGAAGAAGGATTCGTTCCGCGAACACCTGCAGATCCACGAGGGCCCGCGGCACGCGTGCTCGTACTGCCCGATGCGGTTCGTGCAGCGCTCCAACATGCTGCGGCACGAGCGTCGGCACACGGGCGAGCGGCCCTACGCCTGCCCGCAGTGCCCGCGCACCTTCGCCGACAAGGGCGCCTGCACCTCGCACGCCAGGACCCACACAAAAGACACATCGTATGCGTGCATCTACTGCGGGCAGACGTTTGTTCAGAAATCCAAGCTAACTTATCACATTAGAAAACATACTGGAGAGAACCTGGAGACGTGCACAGTTTGCTCGAAGATGTTCACGAGCGCTTGTTCGCTGCGCGAGCACATGAAGATCCACGACCGGCACACGAAAGTGCCTGTCCAGTGTCCCTTATGTGACCGAAAGTACCAAGACGAGCGCTACATGATGCGGCACATCCGCACGTCGCACACGCACAACCGGTACACGTGCCCGCTCTGCCGCAAGACGCTCACCAGCCCCGCCGGCCTGCGGCTGCATGTCGTCACGCACGGGAAGGCCAACATGTACAAGTGCAAAGCATGCCCGAAGACGTACGCTGTTAAGAGGACGATGATGCGGCACGTCCGCAAACGTCACATCCCCAAGAATTCCAGTCAGGCACTTAAGGAGTTCTACCACAAGCTGGACCCTCGCGAATGTTCCCTTCCCCTAGATGACGAGACCATGACGAAGATATTCGGACCACCTAAAAAGAAATCCAACCAAGTTATTCTAAGAAACTTCGTAACGTTAACCAAGAATTTGAACTTACCAGAGAATAACCAaccgaatgatgatgatgaggatagCGATGAATCTCAAGAAGAGTCTCAAGAGAAAGACAGTGACGGCGATAGTGAGACTGAAAAGATAGTAACAAAGACAGAGAAAGAAGATAGTGACGGAGAGTCCAGAGAGGCAGAGTTGGAGCCGACCGACTTTGTCAGTGTTAAGATTGAGCATGTCGAAGAGGATGTGGAAGAAGATGATTGA
Protein Sequence
MSSDESDDEPLSVLAAAKRLNPENFEGLEETTIEVVSPSKKKRKKYQLDDNVFITIKLRPPNIRGPKVVERPTDVWMYIKDLNPTGPYSCLLCSEWFINRSKVILHYVLNHKKDFCGICRYFVAERDDWQAHMKFHTPWPCSQCSESFVTEGEWRKHFSAAHNLVHCRLCHFRTTDDEHYEKHLHDKHNVTNAASKNADSLWEVEYEGCPNFLCLLCSKGDILSTTFFNHYMGYHHFTLKCITNIISGTDPPFTVDGANVSTDFVSDQFKIKTGYLDLEKKPENEGESVVKQEILSDTENNDENNEKDSIVETYKGDEDFDVTLMELIVLQKCYFDYVNYTLNQINSNNVPEDSGIDYKNANDDLELDVECGLCKTCVTSVQTFSTHMRKMHSVKSVPIYSCRVCATTFDNLAELETHVMEEMGEFEDLWLCQFCDKEFDSRETTRKHLNDHLDGMEYDNCFSPHLGFKCKYCPTLFWNETDRETHQIRVHYNKFNEDFYKCESCSEIFSDKVWFIHHYVEKHQTGQEVFFLVKCCVCCLVLPTVEDMRAHFEQNHSEARKIFCSLGACVYKPLSQRKSFKLHVKTVHASEGPKKAACVDGSCSICGREFGSARACSTHMAQVHGARKFKCKLCRDVLHTVDERKLHYLIRHPGKHPYECTECGKSFQYKSSLYMHKQVHAPNKPTFSCTYCGKVFMKKDSFREHLQIHEGPRHACSYCPMRFVQRSNMLRHERRHTGERPYACPQCPRTFADKGACTSHARTHTKDTSYACIYCGQTFVQKSKLTYHIRKHTGENLETCTVCSKMFTSACSLREHMKIHDRHTKVPVQCPLCDRKYQDERYMMRHIRTSHTHNRYTCPLCRKTLTSPAGLRLHVVTHGKANMYKCKACPKTYAVKRTMMRHVRKRHIPKNSSQALKEFYHKLDPRECSLPLDDETMTKIFGPPKKKSNQVILRNFVTLTKNLNLPENNQPNDDDEDSDESQEESQEKDSDGDSETEKIVTKTEKEDSDGESREAELEPTDFVSVKIEHVEEDVEEDD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00075815; iTF_00074776;
90% Identity
iTF_00075815;
80% Identity
-