Atra009810.1
Basic Information
- Insect
- Amyelois transitella
- Gene Symbol
- -
- Assembly
- GCA_032362555.1
- Location
- CM063560.1:6627742-6635014[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00051 0.034 15.2 0.2 2 23 135 156 134 156 0.93 2 10 0.00074 0.05 14.7 2.4 1 23 162 184 162 184 0.96 3 10 0.00012 0.0079 17.2 0.2 1 23 277 299 277 299 0.98 4 10 0.00067 0.045 14.8 0.2 3 23 378 399 376 399 0.90 5 10 0.0026 0.17 13.0 0.3 1 23 414 436 414 436 0.94 6 10 1.1e-05 0.00071 20.5 0.2 1 23 467 489 467 489 0.98 7 10 0.0008 0.053 14.6 0.2 1 23 495 517 495 517 0.97 8 10 0.00045 0.03 15.4 0.3 1 23 523 545 523 546 0.95 9 10 0.92 61 5.0 0.0 1 23 558 580 558 580 0.96 10 10 0.0079 0.53 11.5 0.1 1 20 757 776 757 779 0.93
Sequence Information
- Coding Sequence
- ATGGATGGAGAATTTTCCCTCCACTGGGAGGATGAAGTGGTGAAGGAAGAAGCGGTAGTTGAAACTGAGCAAGTAATTCTCGGTGATATCTCAGATACTCAGTATACAACAATGACATCAGAGGAAATGATTGAGCACACAGATCAAATGGCAGCAGAGAATCTTATGTACTTATCCCAGGACATAGTAAACTACACGGAGGCCGCTGAAATTGATCCCAGTGTCGAGTGTGTCACAGAAGAGGTTGTAACTGACGACTGGGTCATATCTGGAGGGCAGGAAAGAGTGGAAGTCCCATTGGAGCATTTGGTCAATCCTGTTTCTAATGCaaatgaagaaaataacatTGATGATGTTCCTCTACCAACTGATCAGGACGAGTACACAGCAATGCGACCCTGGCCTTGCGATTTCTGTTCGAGAAGGTTCCGCAAGAAGGCGGCCCTCATGAACCACATGGTGGCCCATCAGAACGATCGGCCGCACGCGTGCAATCTTTGCGGAGTGCGGTACGTGCGCAAGTGCGATCTCATGAACCATCTGAAGGTGCACGCCTTCGTTCCTGATTCCCACGATCCTGTTGATTATGAACAATTGTTAGAGGAAGAGAGAGTTATTAAACCAAAGAAAAAAAGGGGACGGCGGAAAAAGAATCCAGAACCAGTTGAGAACGGTGTGTGGGAGAATATGACGTCGGCTCGGACGCAGCAGTGGTCGCGGCGTCGCTCCGGCGCCCGACCCGCGGCCGCGTCCCCGCCGCCGCCCCCCGCGCCCGCCTCGCCCCCCACGCCGCCCACGCCCCCGCCACCCGCCGACCCTTCGCGGCCTTTCGTCTGTGGACATTGCGGTGTTGGATTCGCGAGGGAGAAGGCGCTGCAGTCGCATTCGCGGATCCACGGCGGTGACTCCCCCATAGAGTGCGGCGAATGCGGCGAGCTGTGCTGGTCGCGCGACGGGCTCGCGTCGCACGCGGCGCTGCGGCACCCGCACCTGCCGCCGCGCTCGCAGCCCGCCCCCGCCTACGGGGACTCCGACTCAGATGACGACATGGATTACCAGCTGTCTCCCGTGGAACAGCAGAGCTCTGGAGAGCGACCGGTGATAGAGAACGTGCGAGGACCTTCGCTGTTCTGTCAGCACTGCGGAGTCGCCTTCCAGAGGGCAGACCTTCTGAGGAGACACGTGGCTGCTGCTCATAGTTACAAGCGGCACGACAGCACGAGCAGCACGTGGGGCGAGCACACGTGCGACGTGTGCGGGGAGACGTGCTCCGACGCGCTCCAGCTGCTCGCGCACGCCGAGCTGCACACGTCCCGCCCGCGCGCCCCGCCCTCCGCCAGATTGAAAAAGGTGTCTCGAGGACGAAATAACAGCGTGTCGTCAAGCAGCTCGCGGCAGTTTCCGTGCAAGGAATGCGGCAAAGTGTTTGGATCCCGAAGTTCTCAACAGATTCATGTCCGGATACACACGGGCGAGCGGCCGTACGCGTGCCGCTTCTGCTGGAAAGCCTTCGCGGACGGCGGCACGCTGCGGAAGCACGAACGCATACACACTGGGGAGAAGCCGTACGCGTGCGCGGTGTGCCCGCGCGCCTTCAACCAGCGCGTGGTGCTGCGCGAGCACGTGCGCTCGCACCACTCCGCGCCCGACCGCCGCAACGgtTGTCCAACGTATTCGTGCGTAGTGTGCGAACAGACACTACTGACGAGTGCAGATCTAGTACAACATTTGATACAGCATTGTGACGTCAACACCGCTCTCAAGAGACAACCGCAGGCCGGTCCTCGCAAATACAAGCGGCGGCGGAAAGTGAAGGCGGAGCGGTGGTCGCGGTCGCGGTCCCCCACGCCCGTGTCGTCCCCGGCCGCGTCCCCCGCCCGCTCCCCCGCCGGCTCCCCCGCGCGCTCCCCCGCCGCGTCCCCCGCCGGCTCGCCCGCCGCGTCCCCGCCgcgacgccgccgccgcccccgcGCGCCCCCGCCGAGGCCTAAAATGATACACACGGAGGAAACTACCAGGCCGAGGACTAAGCAAGTGCGACCTCAGGTCCGATCACGTCGACCGCCGCGGCACCCGGCAGACGATCTGCGAGCGATCCGCACGCAACCACTCCGCCGCCGCTCCCCCACGCGATCCCCAACTCGTTCCCCCTCCTACTCCCGCTCACCCGAACAAAAAATAACACCTAAAACAGAACCACCGAACGTGGCGGACTACCACGTGAAAAGAGAACGAACCCCCTCCCCCCACAGCGATCCCGACGGACCGTACAAGTGCGAGATGTGCTCCCTAGAGTTCCCGAGGCGTGACGCGTTACTACTCCACGTGCCAGTCCACATTTGA
- Protein Sequence
- MDGEFSLHWEDEVVKEEAVVETEQVILGDISDTQYTTMTSEEMIEHTDQMAAENLMYLSQDIVNYTEAAEIDPSVECVTEEVVTDDWVISGGQERVEVPLEHLVNPVSNANEENNIDDVPLPTDQDEYTAMRPWPCDFCSRRFRKKAALMNHMVAHQNDRPHACNLCGVRYVRKCDLMNHLKVHAFVPDSHDPVDYEQLLEEERVIKPKKKRGRRKKNPEPVENGVWENMTSARTQQWSRRRSGARPAAASPPPPPAPASPPTPPTPPPPADPSRPFVCGHCGVGFAREKALQSHSRIHGGDSPIECGECGELCWSRDGLASHAALRHPHLPPRSQPAPAYGDSDSDDDMDYQLSPVEQQSSGERPVIENVRGPSLFCQHCGVAFQRADLLRRHVAAAHSYKRHDSTSSTWGEHTCDVCGETCSDALQLLAHAELHTSRPRAPPSARLKKVSRGRNNSVSSSSSRQFPCKECGKVFGSRSSQQIHVRIHTGERPYACRFCWKAFADGGTLRKHERIHTGEKPYACAVCPRAFNQRVVLREHVRSHHSAPDRRNGCPTYSCVVCEQTLLTSADLVQHLIQHCDVNTALKRQPQAGPRKYKRRRKVKAERWSRSRSPTPVSSPAASPARSPAGSPARSPAASPAGSPAASPPRRRRRPRAPPPRPKMIHTEETTRPRTKQVRPQVRSRRPPRHPADDLRAIRTQPLRRRSPTRSPTRSPSYSRSPEQKITPKTEPPNVADYHVKRERTPSPHSDPDGPYKCEMCSLEFPRRDALLLHVPVHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00146692; iTF_01220874; iTF_00012279; iTF_00013363; iTF_01302655;
- 90% Identity
- -
- 80% Identity
- -