Rfor014469.1
Basic Information
- Insect
- Rhodophaea formosa
- Gene Symbol
- -
- Assembly
- GCA_963082605.1
- Location
- OY720215.1:12389698-12412494[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0005 0.041 15.2 0.2 2 23 139 160 138 160 0.93 2 10 0.00072 0.059 14.7 2.4 1 23 166 188 166 188 0.96 3 10 0.00011 0.0093 17.2 0.2 1 23 283 305 283 305 0.98 4 10 0.00075 0.061 14.7 0.0 3 23 385 406 383 406 0.90 5 10 0.0026 0.21 13.0 0.4 1 23 421 443 421 443 0.94 6 10 3.1e-06 0.00025 22.2 0.2 1 23 471 493 471 493 0.98 7 10 0.00077 0.063 14.6 0.2 1 23 499 521 499 521 0.97 8 10 0.00044 0.036 15.4 0.3 1 23 527 549 527 550 0.95 9 10 0.96 79 4.9 0.3 1 23 564 586 564 586 0.95 10 10 0.036 2.9 9.4 0.0 1 20 743 762 743 765 0.93
Sequence Information
- Coding Sequence
- ATGGATGGGGTTGGTGGGGATTTTTCCCTCCATTGGGAGGATGATGAAGTAAAGcaAGAAGCTGTGGTTGAATCGGAGGAGCAAGTGATACTTGGCACTATGCAAGGATCTCAATACACAGAAATGacCTCTACTGAGATGATAGAGAATACAGATCAGATGGCAGCAGAGAACCTAATGTACTTATCCCAAGATATGGTGGGCTACACAGAGACAGCTGAAATAGATCCAAATGTCGAATGTGTTACAGAAGAGGTCATTACCGATGACTGGGTCATTGCCGGAGGGCAAGAAAGagtGGAAGTGCCATTAGATCACTTGGTAAATCCTGTATCAAACACAAACGAAGAAAACAACATTGATGATGTTCCCTTGCCAACTGACCAGGATGAGTACACAGCAATGCGACCATGGCCATGTGACTTCTGCTCGCGACGGTTCCGCAAGAAGGCGGCCCTGATGAACCACATGGTGGCGCACCAGAACGACCGGCCGCACGCCTGCAACCTGTGCGGCGTGCGCTACGTGCGCAAGTGCGATCTCATGAACCACCTCAAGGTGCACGCCTTCGTGCCGGACTCGCACGACCCGGTCGACTATGAAGAACTGTTAGAAGAAGATAGGGTCATTAAACCAAAGAAAAAACGCGGGCGGCGGAAAAAGAACCCAGAGCCAGTTGAGAATGGCACGTGGGAGAACATGACGTCGGCGCGCACGCAGCAGTGGTCGCGGCGGCGCTcgggcgcgcgcgccgcccctCCCCCCGCGTCGCCGCCGCCCGCCCCCGCCCCGCCCTCACCACCTACACCGCCCACCCCGCCGCCCCCCGCGGACCCCTCGCGACCCTTCGTGTGTGGACACTGCGGCGTTGGATTCGCTAGGGAGAAGGCTCTGCAGTCACACTCTAGGATCCACGGCGGCGACTCGCCCATCGAGTGCGGGGAGTGCGGCGAGCTGTGCTGGTCGCGCGAGGCGCTGGCGTCGCACGCCGCGCAGCGCCACCCGCACCTGCCGCCCAGCTGCCGCCCGCCCGACCCCAACTACGGCGACTCTGACTCGGATGACGACATGGAGTTTCGGCTGTCGCCGCTGGTGCACAGTGGCGGCGCGGAGCGGCCGGTGTACGAGACGGTGCGGGGCCCCGAGCTGTTCTGCCAGGACTGCGGCGTGGCCTTCCAGCGCGCCGACCTGCTGCGCAGACACGTCGCCGCGGCGCACAGCTATAAGCGGCACGACAGCACGAGCAGTACGTGGGGCGAGCACACGTGCGACGTGTGCGGCGAGACATGCACGGACGCGCTGCAGCTGCTGGCGCACGCCGAGCTGCACGCCTCGCGCCCGCGCACCACTAACACGCAGAGGTTAAAAAAGAGGGCAGGCAGGAATAGCACATCAGATATGCTACGGCAGTTTCCATGTAAAGAATGCGGCAAGGTGTTCGGGTCACGCAGCTCACAGCAGATCCACATCCGCATCCACACGGGCGAGCGGCCGTACGCCTGCCGCTTCTGTTGGAAGGCCTTCGCTGACGGCGGCACGCTGCGCAAGCACGAGCGCATACACACCGGCGAGAAGCCGTACGCGTGCGCGGTGTGCCCGCGCGCGTTCAACCAGCGCGTGGTGCTGCGCGAGCACGTGCGCTCGCACCACTCCGCGCCCGACCGCCGCCCGCACAATGGTGGTCCTGCATATTGCTGTGTGGTGTGTGACCAGAGGCTACTGACCAGCGCGGAGCTGGTCCAGCATTTGATACAGCACTGTGACGTCAATACGGCTCTCAAGAGGCAGCCGCAGACGGGTCCGCGCAAGTACAAGCGACGGCGGAAAATAAAGGCGGAGCGCTGGGAGCGGTCGCGCTCGGCGTCGCCCGCGTCGCTAGCGCCGCCATCGCCCGCGTCGGCGCGCTCGGCGTCGCGCTCGCCGCCGCCCCGCTCCCCGCCCCGCGCCGCCtcgccgccgcgccgccgccgccgcctgcgcgcgccgccgccgcgcccgcgcaTGATCCACACCGAGGAACCCCGGCCACGCACCAAACAGATACGTTCTCGCCGACCGCCACGACATCCGGCCGACGACCTGCGCGCCATCCGAACGCAGCCGCAAATGCCGAGTCGCTCGCCGACGCCGGAACCGGTAGCGAAATTTGAGCCAAAGAGAGAGCCGAGCTTGGAGCCGAAAGAGGAGCGCAGTCCGTCGCCGTCGCCACACGACGCCGACGGGCCCTACAAGTGCGAGATGTGCGCGCTGGAGTTCCCGCGGCGCGACGCGCTGCTACTGCACGTGCCCGTGCACATCTGA
- Protein Sequence
- MDGVGGDFSLHWEDDEVKQEAVVESEEQVILGTMQGSQYTEMTSTEMIENTDQMAAENLMYLSQDMVGYTETAEIDPNVECVTEEVITDDWVIAGGQERVEVPLDHLVNPVSNTNEENNIDDVPLPTDQDEYTAMRPWPCDFCSRRFRKKAALMNHMVAHQNDRPHACNLCGVRYVRKCDLMNHLKVHAFVPDSHDPVDYEELLEEDRVIKPKKKRGRRKKNPEPVENGTWENMTSARTQQWSRRRSGARAAPPPASPPPAPAPPSPPTPPTPPPPADPSRPFVCGHCGVGFAREKALQSHSRIHGGDSPIECGECGELCWSREALASHAAQRHPHLPPSCRPPDPNYGDSDSDDDMEFRLSPLVHSGGAERPVYETVRGPELFCQDCGVAFQRADLLRRHVAAAHSYKRHDSTSSTWGEHTCDVCGETCTDALQLLAHAELHASRPRTTNTQRLKKRAGRNSTSDMLRQFPCKECGKVFGSRSSQQIHIRIHTGERPYACRFCWKAFADGGTLRKHERIHTGEKPYACAVCPRAFNQRVVLREHVRSHHSAPDRRPHNGGPAYCCVVCDQRLLTSAELVQHLIQHCDVNTALKRQPQTGPRKYKRRRKIKAERWERSRSASPASLAPPSPASARSASRSPPPRSPPRAASPPRRRRRLRAPPPRPRMIHTEEPRPRTKQIRSRRPPRHPADDLRAIRTQPQMPSRSPTPEPVAKFEPKREPSLEPKEERSPSPSPHDADGPYKCEMCALEFPRRDALLLHVPVHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00073095;
- 90% Identity
- -
- 80% Identity
- -