Asol084839.2
Basic Information
- Insect
- Amphimallon solstitiale
- Gene Symbol
- -
- Assembly
- GCA_963170755.1
- Location
- OY720678.1:143533465-143535302[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5.9e-12 3.1e-10 42.8 0.0 4 45 20 61 17 61 0.94
Sequence Information
- Coding Sequence
- AtgccaaatatttacacaaggaAAGGTAATGTACACCGAGGAAACTGGACGTCCAGAGCACTTCAAGATGCCTTAACTGCAGTAGCAAATGGAGTAATGGGGTTGAACGAAGCTGCTAGAAATTTTGGAATACCAGCAACCACATTGAAACGTAGAAAACGAAATGGTAATCCTACGAAACAAAATCGTCTCGGTCCGCCATCGTCTTTGGGCGAGGATGCAGAAATCAAATTAGTGCGACATATCAAAAAGCTTCAAAAATTTGGTTTTGCTCCTACCAGGGATGTACTCCGTAGAATGGCGTATGACTTGGCTGAAAAGATGAATATTAAACACAGTTTAACAGAGCCACTGGGAATGTTAAGAAAAGCTGTATCAGATTATTTTAAACTTCTAGAAAACACTCTTATAGAAAACGACTTATTGGAAAAACCCGGAAATATTTACAACATGGATGAAACCGGCCTTCAACTCAATAATAACGCCGGACATGTGGTCGCTGCAAAAGGCTCTAAAACCATCTCTGCTATAACTTCTGGCGAAAAAGGAGAAACAATCAGTGTTGTAGCTTGTTGTAATGCTGAAGGGTCATTTTTGCCCCCGTATTGCATTTTTAAAGGGAAAAATAAGAAGGACAACTGGGCTGACGGTATGCCACCTGGTTCTTCTATTAGGATGTCCCCCAAGTCGGCATACGTTAACAGTGAAATTTTTCTTGACTggttaaaaaatcattttgtccCTAGAAAAAGACCTGGTAAAGTACTTTTACTACTGGACGGACACACTTCGCATACTAATTCGATTGATGTGTTAGAATTTGCTGAAGAAAATGAGATAATTCTATTGTGCTTTCCGGGTCATACCACTCATTATTTGCAACCACTGGATCGAGCTTTTTTTAAATCGTTGAAGTCGCATTACTATgcggaatgcaataaatttataagaatcaAACCAACAAGAAAATTGAATAGAACAGTGTTTGGAAAACTATTTGGAGATTCGTGGAACAAAGCAGCCACCGCGCAAAATGCCATTTCTGCCTTTAGGGCTACTGGTGTTGTGCCACTTAACCAAGATGCAATTCCTGAGTATGCCTTTTTAATGCTCGATGATGATAACGTTCAGCCACCAAATTCATTCCAACCATCACCGAATCGTTCAAACTCACCACAACCGGGCCCATCACACGAATATGAAACTCGGCGATCTTGCACTCCGCCGATTCAACATTCTCGGACTAACAATCAAGTATTGGTAGAAACACCAAAGAAAACTCCAGGAAAATTGCTGGATGAAGTTTCCCCGATCCCAGAAATTAAACCCTTAAGTGAAGTAAGAAAACGTGGAAGAAATGTGGCAACAGTTCTTAATTCAAGTAAGAATATTAAAGCCATGAAAGAAAAAAGTGATTCAaaacagaagaaaaagaaaaatgtaaagaacacagcaaagatgggtacaaaacaaaatcaaatgaaaaggaaaaccaagaaaaaaattcaatCGCCTGAAAACTCAGATTCGTCGATGGATTACGAGAGTCAAGAATTGAATGACTCTGAAGATAGTGGAGATGAAGATTATGAAACCACCTGCGCTGGTTGTGGGGAGaactacataaaaacaaaaaaagttgaagactggatcaagtgtattcgatgtggacgatggatgcacgaaaactgcaccaaatatttgaatttttgcgatatttgtggcaaacatgccaagaaataa
- Protein Sequence
- MPNIYTRKGNVHRGNWTSRALQDALTAVANGVMGLNEAARNFGIPATTLKRRKRNGNPTKQNRLGPPSSLGEDAEIKLVRHIKKLQKFGFAPTRDVLRRMAYDLAEKMNIKHSLTEPLGMLRKAVSDYFKLLENTLIENDLLEKPGNIYNMDETGLQLNNNAGHVVAAKGSKTISAITSGEKGETISVVACCNAEGSFLPPYCIFKGKNKKDNWADGMPPGSSIRMSPKSAYVNSEIFLDWLKNHFVPRKRPGKVLLLLDGHTSHTNSIDVLEFAEENEIILLCFPGHTTHYLQPLDRAFFKSLKSHYYAECNKFIRIKPTRKLNRTVFGKLFGDSWNKAATAQNAISAFRATGVVPLNQDAIPEYAFLMLDDDNVQPPNSFQPSPNRSNSPQPGPSHEYETRRSCTPPIQHSRTNNQVLVETPKKTPGKLLDEVSPIPEIKPLSEVRKRGRNVATVLNSSKNIKAMKEKSDSKQKKKKNVKNTAKMGTKQNQMKRKTKKKIQSPENSDSSMDYESQELNDSEDSGDEDYETTCAGCGENYIKTKKVEDWIKCIRCGRWMHENCTKYLNFCDICGKHAKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00065173;
- 90% Identity
- iTF_00065149;
- 80% Identity
- -