Ajug003367.1
Basic Information
- Insect
- Amorpha juglandis
- Gene Symbol
- MBD-R2
- Assembly
- GCA_949126905.1
- Location
- OX421368.1:4430664-4453582[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.3 1.5e+04 -3.9 0.0 32 48 463 479 460 480 0.83 2 2 5.7e-16 2e-12 47.0 0.0 5 63 797 854 793 913 0.88
Sequence Information
- Coding Sequence
- ATGGCTGTAAAAAACTGTTGCATACGAACATGTAAATCCTGCTCGACAAGGAAGGAGGATAAAGGTGTCACATACCACAGATTTCCAAAAGACTTAATTTTACGTAACAAATGGATGTCTATAACTGTTTGCAATGATTTAGACTTGCCGAAGTATGTGTGCTCAAGACATTTCTGTAAAAATGACTTTCAAATGTATAAGGACTCTAAGTACATACTGAAGTCAGatgCAGTGCCTTCAATTTTTCCATGGACAATGTCTGACATAAATAATACCCAGAAGATGGAAACAGCAGACAATAAATTAGAAGATGATGCTTCAAACCTTCAGAACACAAAAGTAGACTTGAATACATCAGATAGTAGTAAGGAATCTGAAGAAAATCtggatgcaataaaaaaattcattGAAGATCAAGATAAAGAAATACAAGAGAGAGATGTTGCTGATAATGTTAGGGAGAATGTTGAAActgaaacaaacattaataaGGTTCCAAATAATGACCATGATGAAAGAGCCAGTAATGATAAAAGTAATGTCATTGATAAAAATACCACTAAAGATGTAAGTAATATTAAGGAAGACAATATCAATATGGATATAAATAATGACAATGAAAATGCCAGTAATGATGTAAATTGTTACAATGATGAAGATGCCAGTAATGTTTCTAATAATGACAATGAAGGGACAATGGTAGTTGGTACCAGTGTAATGGATATGATATTGAATGAATCTGGGGAAAAAATTGAGGACAAAAAAGATTTTACTGTGCCCAAATATAGTTTGAGTCCTGATAAAGttgctAGTGGCAGCATTTCTCTATCAGTTGGTTCAAGAATAGAAGCTAAAGATTTTGGTGATGAATGGCATCCGGCGCAGATTGTGGAGGTTGATTATGACGAGATGGAAGTCTTGGTCCGTTATGAACCACACAACAAGAGTATTTCGAGACATGACGAATGGATCAGCGTGAGTAGTCCACGGTTACGTCCAACAACCGACAAGTCTAAACATGAAACAAATGTATCAGACAAGATTCCCGAACAGGACGCACCAGTTAAGGAGGAAATCAAAGAAATAAAGGTAGAAGAGAAGCCGAAATTAACTTTCGCAGTGGGGGAGAGATGTTTGGCGCGTTGGAGAGATAATAGGAGGTTTATTGCAACCATACAAAATGATTTGGGGAATGGTGCGTATGAAATAATTTTCGATGATGGCTTCCACTGGAAATGTAACGTATCAAGGCTTTATAAGTGTAAACCGACCGGAAAGCAAGATGTTCTTACCGTAGATACATCGTTACATTCGCCAACTGGAGCCCCGTCTCCCATACAAGTTGGTGGTCCAAGCACTGCAGTCCCAACTAACACGACATTTTTTCACACGCATTTATTTGACCCCACACGAGATTACCTAAGTTCAAAAAGTGAACGACGTGAAATGAAAAGGAAATTGAATATAAAAGAGATATTTAATATAGGACAAAAGAGACAGAAAACTAAATCGGATAAAGTAGTGAGAAAGCCAAGAATCATACGACGTACTCCCAAAGTTAAAGCTGAACCTATTAAAAAGGAGCTGAAGGTTGAACTTAAAAGGGAGATACCTGATGCTGTCGCCTCTATCATTGGTACGGTTGATAAAAAACAGCCTGGGATAACAGAATTAACGAGTGAAGACATTATCGAAGTTAAATtagaagaaatagacaaggaTGATATTGAAATTACAGATGTTAAAGTACCTGAAATTGATAACACACAGGTAGcggataatttaaaaatggatccGTTTAAAGCAGAATTAGACCCTGTACACGAGGAAGATGTGAAACTTGAAAAATTTGATAAACAAGATGACGGTAAGCACGAAGAAGTAATCGATAGAATAAaagaagtaataaataaactggAGGGCGGTTTGAATGAGCAAATGGTGAATTCACCCAAAATAGAAACCAAGGAAGAAATCCCTGACAAAATTGAATCCGTAGATGCAAAACAAGAACCAGAAGGAAACGTCTCCATAGACGTCAACGAAGTCGTAACCACTAccccaaaaataaaatctaagaaACTATCAAAGATAAAGAAAGGTAAAAAACTGAGAATGTTGCAAGAGAAAAAGGTTAAGAAACAAGTACAGAAGGTTAAAAACGAACTTGAAGAGATGAAGCGGCAGGTGGAAGAGATGCGAAAGCAGATGTTGTTGAAAACGCAAGAGTTTGCGAGAGGACAAGCGGAGATGCCGGAGAGCTTTTTGTTGCCTGGCGAATGGTGTTGTCGGTGGTTAAACGGTCAACCTGTAGGAACGGTCAGTGAGATTGTGTGCGAGCCTAAGATCGATGGAGGGGGGAATCCAGGGTTGCCGCGGCGTAGCGTACAGGTGGAAGATAAGCGGTTACCTGCAGGCTGGACGAAACACATGGTACGCAGGAGTTTAGGACATTCAGCCGGAAAGTGGGATGTTGTGCTTGTGAGtcCAGAAAACCGTCGTTTCCACACAAAAACGGACATGCGTAATTACTTAGAAAACAATACCGATGAATCGCTAAAGCAGTACGAAGCGGCGTTAATGGATTTTGGGGTTCATTTAAAATTGGCCCGGCGTATGGGGTGGATCACGACGACTCCGGGTGGAGTGGCTGATGGGCCATCGTTACCATGTGGCACATTGCACAGTACCTCCCCATTAGTAAAGAGAAAGAAGCTATGTCTTAAGAAATCGGAGAAGAAATGTCGGGTGAAGAAAACCAGGGACAAGAAGAAGAAAATGTCTTTTAGGATAAAATTGGCTTTGTCTTCTCAGAACgcTGTTGACGAGACCTTAGATATTGATACTACTTGCAATTCCGTCGCGACCACAGAACCTGCTCTTGAAACTTTGACTTTAGAAGATGGATACGTTTACGTCGGATCCCTCAAAGTTCAAATAATAGAGAATCTTCTCCGATGTCCAGCTGACGGTTGCTTCAAGAATTTCCGAAACAACACGCTATTGCAAATGCATATTAAACATTACCATAGAGAATTGAGAGAAAAGTTAGGTGATACCCCTAAAGTTCTTGACTTGGCATATGCTAGAACTATGCCACTGGTGCCTGACCTGCCTCGACAAGCAGATTCTAAAGTTATTAAGGTTAAATTACCAAAACCGAAGCGCGATGAGCCTAAACTTGAACCTGTTGATGTCAAATCAGATTTACTAATTGATACTGGACCTAAAACACCACTTAGCCAAGAAGGTGATAGTATTCCAAAGACACAAGATTCGCCTAAATTGCGTGATGCGTTGATTACCAAGCCAGTGAAAAGACCAAAGGTTTTACTTCCTGTCAGGAGACCGGAGTTTGATCCAGAACTACAAAATGTGGACGATTATGAAGAATTACCAGAAATGCCAGTCGATGAAAGTTTGATGGAGCAGTTAGATTTTGAAACTGCAATTTCAACTCATACTGTGACTAAGCCAATTTGTGAAAAGAGTAAGAAAGGCGAGAAAAAACGAAAATCAATAACAATGATGTCGCAGAAGGCAAGTGAGGATGAAGAATGGTACGCGAACTCCGATTTGGAGACGAGATCTAGTTTCCCGCGGTCTGGCTCGCCGGACTCCAAGTCAGCGGAGATGCAATTATATAAGGCACGGACTTTAACGCCGGAGTCTGCTGAAGAGCACAAAGAGACGCAGAAGTACACGTTTACCGAGAATGGTGAACGTGTGAAAATAGTGCATATGAAGCGTGAGGAGATCATCAATTGCCACTGCGGGTTCCGTGAGGAGGACGGGCTCATGGTGCAGTGCGAGCTGTGTCTGTGTTGGCAGCATGCGCTCTGCCACAATATACAGAGCGAGGCGCAgGTGCCCGAGAAGTACACATGCAGTATATGCCTGAACCCACGTCGCGGTCGTAAATCCCAGCGGTTCCTGCACGATCAGGACCGTCTGTACGAAGGACTGCTGCCGGGAGCCAAGCCTTGCGACATGTTGCGACGCTCACACGAACTGTCCGGCAATCTGTTGCGGATACAGGACGCGTTGCACGCACTCAGGGTCAAATGCTTTGTGGCCTCTAAAAAAGACCATCCGAAATTGTACCTATGGGCCAAAGACTGGGAGCACGCCGAGATATCATACACTCAAGAGAAGCTTAACTCTGACTACTCAGACCTGAACATAATGATCAACACAGTGGGCAAGGAGAATATGCCGATGAAACCTGAGGACATGAAGGACATACAGCTCGGCCTGTCGTCTGATGACGCTGATCTTGACAGGTTCTCACAGAGAGATAATCAACTAAGCTCTAACGTGTTGTTGAACAACTTGCTGTCAAGTCCGGGCGGGACGTCACTCGACCTGCCCATAAGTACGTCCGAATTGGAGACGCTTGCCCAATCTGTTCAAGAGCAAGAGTGCAGTGTGTCGGAGCCCCCGCCGTGTGTAGTGTCGGAGCCCCCGCCGTGTGCGCCTGTGCCCGAGGCGGCGATCGAGAACGGCGCGTGCCGCGTGCGGCTGCTGCGCCACCTGCGGCGCTGCCACGCGCTCGTCGACGCCAGGCTCGACTCCATCGAGGCGCAGGTGGCAGAGTTGGAGTCACAAGACCCATCATTCGAAGACGACGAGACGCCCGACTTCTTCCCGCGAACAAAGCAGACAGTTCAAATGCTGTTACGAGATCTGGATACTATGGAGGAGTTGGGAaccattacataa
- Protein Sequence
- MAVKNCCIRTCKSCSTRKEDKGVTYHRFPKDLILRNKWMSITVCNDLDLPKYVCSRHFCKNDFQMYKDSKYILKSDAVPSIFPWTMSDINNTQKMETADNKLEDDASNLQNTKVDLNTSDSSKESEENLDAIKKFIEDQDKEIQERDVADNVRENVETETNINKVPNNDHDERASNDKSNVIDKNTTKDVSNIKEDNINMDINNDNENASNDVNCYNDEDASNVSNNDNEGTMVVGTSVMDMILNESGEKIEDKKDFTVPKYSLSPDKVASGSISLSVGSRIEAKDFGDEWHPAQIVEVDYDEMEVLVRYEPHNKSISRHDEWISVSSPRLRPTTDKSKHETNVSDKIPEQDAPVKEEIKEIKVEEKPKLTFAVGERCLARWRDNRRFIATIQNDLGNGAYEIIFDDGFHWKCNVSRLYKCKPTGKQDVLTVDTSLHSPTGAPSPIQVGGPSTAVPTNTTFFHTHLFDPTRDYLSSKSERREMKRKLNIKEIFNIGQKRQKTKSDKVVRKPRIIRRTPKVKAEPIKKELKVELKREIPDAVASIIGTVDKKQPGITELTSEDIIEVKLEEIDKDDIEITDVKVPEIDNTQVADNLKMDPFKAELDPVHEEDVKLEKFDKQDDGKHEEVIDRIKEVINKLEGGLNEQMVNSPKIETKEEIPDKIESVDAKQEPEGNVSIDVNEVVTTTPKIKSKKLSKIKKGKKLRMLQEKKVKKQVQKVKNELEEMKRQVEEMRKQMLLKTQEFARGQAEMPESFLLPGEWCCRWLNGQPVGTVSEIVCEPKIDGGGNPGLPRRSVQVEDKRLPAGWTKHMVRRSLGHSAGKWDVVLVSPENRRFHTKTDMRNYLENNTDESLKQYEAALMDFGVHLKLARRMGWITTTPGGVADGPSLPCGTLHSTSPLVKRKKLCLKKSEKKCRVKKTRDKKKKMSFRIKLALSSQNAVDETLDIDTTCNSVATTEPALETLTLEDGYVYVGSLKVQIIENLLRCPADGCFKNFRNNTLLQMHIKHYHRELREKLGDTPKVLDLAYARTMPLVPDLPRQADSKVIKVKLPKPKRDEPKLEPVDVKSDLLIDTGPKTPLSQEGDSIPKTQDSPKLRDALITKPVKRPKVLLPVRRPEFDPELQNVDDYEELPEMPVDESLMEQLDFETAISTHTVTKPICEKSKKGEKKRKSITMMSQKASEDEEWYANSDLETRSSFPRSGSPDSKSAEMQLYKARTLTPESAEEHKETQKYTFTENGERVKIVHMKREEIINCHCGFREEDGLMVQCELCLCWQHALCHNIQSEAQVPEKYTCSICLNPRRGRKSQRFLHDQDRLYEGLLPGAKPCDMLRRSHELSGNLLRIQDALHALRVKCFVASKKDHPKLYLWAKDWEHAEISYTQEKLNSDYSDLNIMINTVGKENMPMKPEDMKDIQLGLSSDDADLDRFSQRDNQLSSNVLLNNLLSSPGGTSLDLPISTSELETLAQSVQEQECSVSEPPPCVVSEPPPCAPVPEAAIENGACRVRLLRHLRRCHALVDARLDSIEAQVAELESQDPSFEDDETPDFFPRTKQTVQMLLRDLDTMEELGTIT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00341337;
- 90% Identity
- iTF_00063671;
- 80% Identity
- iTF_00063671;