Acom013741.1
Basic Information
- Insect
- Amiota communis
- Gene Symbol
- bab1
- Assembly
- GCA_037043315.1
- Location
- JBAMAV010001060.1:3312499-3314830[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.2e-09 3.5e-06 27.5 0.0 2 42 426 466 425 469 0.87 2 2 3.2 9.7e+03 -2.8 0.9 4 20 585 600 585 600 0.86
Sequence Information
- Coding Sequence
- ATGGGTGGACCACCGCCAGTTCCTACAGTGCCTGCTACCGAAGGTCAAACATATTGCCTACGTTGGAATAATCATCAGACGAATCTAGTACAGATATTGCACGCACTCCATGAAGTGGGTAGTTATGTAGACTGCACCCTGGTGGTAGACGATGATCATTTTAAGGCACATCGTGTGGTTTTGGCTGCCAATTCACCATATTTCCAGACCATATTACAAGATGTTCCACTGGATCATTGTAGTATCATATTGCCAGGTGTCAAAGGATTTGAGATTGCCGCTCTTctgcaatatatgtatacgGGAGAGACTACGGTAACAAAGAGTCAAGAACCAGAGATTTTGCGTACCGCAAAAGAGTTGCAGGTGAAAGGACTCTATGACAATCttatgaaattcaattcaaaggAGGAGCATCCTGCACATGTGTCATTAAGTCATCATTATGCCAGTTCGACAGCACCGCATACGCCTTATTTGCCgacttcatcttcattatcagCAGCCATCGGTGCTAAGAATGGCAGCCTACACAATGGTGGTATAGATCCTTATGGCGTGGCTGGCGCTGGCATTCTACACAATTCCTCATCGGTGATCTCAACATCGACGAATATTTCACCATCTGCTGCGATCTCAAGTAGCTCTTCGCCACCATACAGTGGTGCTGGCGCTGGTGCCAGTGCTTATCAACAACCGCCTTATGCCTCTAGCATGTACCGTAAATCACCCGGTCctgctactgttgctgctgtagccGCTGCCGCAGCTGCTGCCGAACACTCCACACATACAGTCACCGGTGGAAGTGGTGATGCTGGCCCCACTGCTGCTGCCGTCGCTGCTGCCAGTGAACGTGGTCAGTGGCCAATGACGACATCTGCAGCtactgccgctgctgctgccatgCTTAATTCAGTCTATGAATCTGCTGCCGATATGAATCCTCTTAAACGTAAGAAGCTCTCTGCCATTTCGAGTATGTTTATGAACCGTGATACTCCCATCTTGCGGAATGTGTTAGCAAATCCAGCTGATTCCTCGCAACCAAGTCCCTTGATGCTGCCCGGAGTCTACAAGGGTGACAAACCGACTGAGAAACAATCAACACAGAGCACTCCAAGCAATAACAATCATAGTTTCAATGGCTCCGACTATGGTAGCGATAAGTATCAGGATGAACCACTTTCACCACATACCGATCGCTCCTTTGACGATGATGCTGGAAACAATGCTAGCAAGAAGCCCGAATGGAAGCGCTATAAGCAATATACACGTAACGATATGATGTGTGCCATCCAGTGCGTCCGTGAGGGCATGTCTGCTCTTCAAGCTTCACGCAAATTCGGTCTGCCATCGCGTACACTATACGACAAAGTGCGAAAACTTAATATAAACACAGGTCGTGGTACTGGTCGCACACCAAAACGCAGTCCCCCTAGTGTTGAATCATCTGCTGCGTTCCCATATTCGTCACATCATGGTTATGGTCAGGTTGAGTCTTACTCTACTGGTGGCGGAGCTGCTGCTAGTGGTGGCGCAAGTATGCACGATGAACGGGAACCCAAAGAGCAGacaagtcatcatcatcaccagcaacagcaacaacatcatcatcgtgcCGAGGCCACACATCACATGCCACCAACTATACCACATTCAGCAGCCGCACTCTTGGATCATGCATTCCTACAGCAAGCACTTGAAAATCGAAACAATGACATTGCTGGCCGAGAAGCTTTGCATGCCATGGCCTTGGCAGCTGCTGCCCATGCAGCAGCCAATCGCATGAGCACAAGTCCCGGTTCCAATGGTCATGGTGCACGTTCACCAAGTCCTGTTCCACCAGTGCGTTACAGCAGTACCAGTGCGGACTTACATGATAAGTCGCAGCCACCACAGTCACATCACGCACAATCAGAGGAAGTAGTGCACATGATCAAACGTGAGGCAATCGATCGTGAAGAAcgtgatgctgatgatgaagacgatCAAGTCGAAGATTTGTCTGTGGCGCGTAAGAAACGCGGTTCAAGCAGACGTCCCGATTCACCATATGCAGCCCATCAACGTATGAAGTCACCCACTCCAATGGATACTAATGAAGGCAGTACTAGTGTGATTATACCATTAACTCAGTTGAGCAAACAACTAGCTGCATCATCTTCATCCATTAATGGTGGTGATGGCGATAATGATGGGTATGATACTCTTGCTACCAAACGAGAGCGTGAAGTTCATAGTGAAGATGGTCACAGCTCCGACTGA
- Protein Sequence
- MGGPPPVPTVPATEGQTYCLRWNNHQTNLVQILHALHEVGSYVDCTLVVDDDHFKAHRVVLAANSPYFQTILQDVPLDHCSIILPGVKGFEIAALLQYMYTGETTVTKSQEPEILRTAKELQVKGLYDNLMKFNSKEEHPAHVSLSHHYASSTAPHTPYLPTSSSLSAAIGAKNGSLHNGGIDPYGVAGAGILHNSSSVISTSTNISPSAAISSSSSPPYSGAGAGASAYQQPPYASSMYRKSPGPATVAAVAAAAAAAEHSTHTVTGGSGDAGPTAAAVAAASERGQWPMTTSAATAAAAAMLNSVYESAADMNPLKRKKLSAISSMFMNRDTPILRNVLANPADSSQPSPLMLPGVYKGDKPTEKQSTQSTPSNNNHSFNGSDYGSDKYQDEPLSPHTDRSFDDDAGNNASKKPEWKRYKQYTRNDMMCAIQCVREGMSALQASRKFGLPSRTLYDKVRKLNINTGRGTGRTPKRSPPSVESSAAFPYSSHHGYGQVESYSTGGGAAASGGASMHDEREPKEQTSHHHHQQQQQHHHRAEATHHMPPTIPHSAAALLDHAFLQQALENRNNDIAGREALHAMALAAAAHAAANRMSTSPGSNGHGARSPSPVPPVRYSSTSADLHDKSQPPQSHHAQSEEVVHMIKREAIDREERDADDEDDQVEDLSVARKKRGSSRRPDSPYAAHQRMKSPTPMDTNEGSTSVIIPLTQLSKQLAASSSSINGGDGDNDGYDTLATKREREVHSEDGHSSD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00061228; iTF_00062885; iTF_00062689; iTF_00062037; iTF_00061867;
- 90% Identity
- iTF_00061228; iTF_00062885; iTF_00062689; iTF_00062037; iTF_00061867;
- 80% Identity
- iTF_00061228;