Amar021351.1
Basic Information
- Insect
- Amiota mariae
- Gene Symbol
- bab2
- Assembly
- GCA_035041805.1
- Location
- JAWNKV010000426.1:5258088-5260411[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.1e-09 3.7e-06 27.5 0.0 2 42 423 463 422 466 0.87 2 2 3.2 1e+04 -2.8 0.9 4 20 582 597 582 597 0.86
Sequence Information
- Coding Sequence
- ATGGGTGGACCACCGCCAGTGCCTACAGTGCCTGCTACCGAAGGCCAAACATATTGCCTACGCTGGAATAATCATCAGACGAATCTAGTACAGATATTGCATGCACTCCATGAAGTGGGTAGCTATGTGGACTGCACCCTGGTGGTGGACGATGATCATTTTAAGGCACATCGTGTGGTTTTGGCTGCCAATTCACCATATTTCCAATCCATATTACAAGATGTCCCACTGGATCATTGCAGTATCATATTGCCAGGCGTCAAAGGATTTGAGATTGCCGCCCTTCtgcaatatatgtatactggCGAGACTACGGTAACAAAAAGTCAAGAGCCAGAGATTTTGCGAACCGCAAAAGAGTTGCAGGTGAAAGGACTTTATGACAATCTTatgaaattcaatcaaaaagaTGAACATCATGAACATGTGTCATTGAGTCATCATTATACCAGTTCCACAGCACCACACACGCCTTATTTGCCGACTTCTTCGTCATTATCAACAGCCATGGGTGCTAAGAATGGTAACCTACACAATGGTGCTATGGATCCTTATGGCCTTGCTGCCGCTGGCATTCAACACAATTCCTCATCGGTGATCTCAACTTCGACAAATATTTCACCATCTGCTGCGATCTCGAGTAGTTCTTCGCCACCATACAGTGGTGCAGGCGTTGCTGCCAGTGCTTATCAACAACCACCTTATGCCTCTAGCATGTACCGTAAATCACCAGGTCCTGCTACTGTTGCTTCTGTAGCCGCAGCGGCTGCTGCAGCCGAACAGTCCACGCATACAGTCACGGGCGGaagtggtggtgatggtggtgccGTCGCTGCTGCCAGTGAACGTGGCCAATGGCCATTGACGTCATCTGCTGCtactgccgctgctgctgccatgCTTAATTCGGTCTATGAATCTGCTGCTGATATGAATCCTCTTAAACGTAAGAAGCTCTCTGCCATTTCAAGTATGTTTATGAGCCGTGATACGCCCATATTGCGCAATGTGTTGGCAAATCCAGCTGATTCCTCGCAACCAAGTCCTTTAATGCTGCCTGGAGTCTACAAGGGTGACAAACAGACTGAGAAACAATCAACACAAAGCACTGCAAGCAATAACAATCACAGTTTCAATGGCTCTGACTATGGTAGTGATAAGTATCAGGATGAACCACTTTCGCCACATACCGATCGCTCCTTTGACGATGATGCTGGAAATAATGCTAGCAAGAAACCCGAATGGAAGCGCTATAAGCAGTATACACGTAACGATATGATGTGTGCCATCCAGTGCGTCCGTGAAGGCATGTCTGCCCTTCAAGCTTCACGCAAATTTGGTCTGCCATCGCGTACACTCTACGACAAAGTGCGTAAACTCAATATAAATACTGGTCGTGGCACTGGGCGCACACCAAAACGTAGTCCACCAAGTGTTGAATCATCTGCTGCGTTCCCATATTCATCACATCACGGCTATGGTCAGGTTGAGTCTTACTCTGCTGGTGGAGTAGCTGCTGCCAGTGGTGGCGCTGTTATGCACGATGAGCGGGAACCAAAAGAGCAGACAagccatcatcaccaccagcaacagcaacaacatcaccatcgTGCCGAGGCCACGCATCATATGCCGCCAACCATACCACATTCAGCAGCCGCACTCTTGGATCATGCATTCCTACAGCAAGCACTTGAAAATCGAAATAATGACATTGCTGGCCGAGAGGCTTTGCATGCCATGGCCTTGGCAGCAGCTGCCCATGCAGCAGCCAATCGCATGAGCACAAGTCCCGGTTCCAATGGTCATGGTGCACGTTCCCCAAGTCCAGCTCCACCCGTGCGCTACTCCAGCACCAGTGCGGACTTACATGAGAAGTCGCAACCACCACAGTCGCATTATGTACAATCAGAGGAAGCAGTGCATATGATCAAACGAGAGACAATCGATCGGGAAGAACGCGATGCTGATGACGAAGACGATCAAGTGGAAGATCTATCTGTGGCCCGCAAGAAACGCAGTTCAAGTAGACGTCCTGATTCACCATATGCACCCCATCAACGTATGAAGTCACCCACTCCAATGGACACTAACGAAGGCAGTGCTAGTGTGATTGTACCATCAACTCAGCTGAACAAACAATTGGCTGCATCATCTTCATCCATcaatggtggtgatggtgataatgatagTTATGATACTGTTAACACTAAGCGCGAGCATGAAGTTCATAGTGATGATGGTCGCAGCTCCGACTGA
- Protein Sequence
- MGGPPPVPTVPATEGQTYCLRWNNHQTNLVQILHALHEVGSYVDCTLVVDDDHFKAHRVVLAANSPYFQSILQDVPLDHCSIILPGVKGFEIAALLQYMYTGETTVTKSQEPEILRTAKELQVKGLYDNLMKFNQKDEHHEHVSLSHHYTSSTAPHTPYLPTSSSLSTAMGAKNGNLHNGAMDPYGLAAAGIQHNSSSVISTSTNISPSAAISSSSSPPYSGAGVAASAYQQPPYASSMYRKSPGPATVASVAAAAAAAEQSTHTVTGGSGGDGGAVAAASERGQWPLTSSAATAAAAAMLNSVYESAADMNPLKRKKLSAISSMFMSRDTPILRNVLANPADSSQPSPLMLPGVYKGDKQTEKQSTQSTASNNNHSFNGSDYGSDKYQDEPLSPHTDRSFDDDAGNNASKKPEWKRYKQYTRNDMMCAIQCVREGMSALQASRKFGLPSRTLYDKVRKLNINTGRGTGRTPKRSPPSVESSAAFPYSSHHGYGQVESYSAGGVAAASGGAVMHDEREPKEQTSHHHHQQQQQHHHRAEATHHMPPTIPHSAAALLDHAFLQQALENRNNDIAGREALHAMALAAAAHAAANRMSTSPGSNGHGARSPSPAPPVRYSSTSADLHEKSQPPQSHYVQSEEAVHMIKRETIDREERDADDEDDQVEDLSVARKKRSSSRRPDSPYAPHQRMKSPTPMDTNEGSASVIVPSTQLNKQLAASSSSINGGDGDNDSYDTVNTKREHEVHSDDGRSSD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00061040;
- 90% Identity
- iTF_00061040;
- 80% Identity
- iTF_00062037;