Basic Information

Insect: Altica viridicyanea
Gene Symbol: -
Assembly: None
Location: GWHAMMQ00000356:338580-346403[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 6.3 5e+02 0.9 0.0 26 44 211 229 199 233 0.75

2 13 0.35 28 4.9 0.2 21 48 234 261 230 265 0.89

3 13 0.11 8.8 6.5 0.0 23 45 293 315 285 322 0.86

4 13 2.8 2.2e+02 2.0 0.1 21 46 319 344 315 350 0.75

5 13 4.6 3.6e+02 1.4 0.0 22 45 348 371 344 378 0.84

6 13 1.3 1e+02 3.1 0.1 21 46 375 400 371 407 0.86

7 13 0.05 3.9 7.6 0.5 21 51 460 490 451 493 0.86

8 13 3.3 2.6e+02 1.8 0.0 22 52 489 519 484 520 0.85

9 13 0.2 16 5.7 0.1 21 46 516 541 508 547 0.83

10 13 0.94 75 3.6 0.2 21 48 544 571 540 576 0.86

11 13 5.4 4.2e+02 1.1 0.3 21 46 573 598 568 604 0.80

12 13 0.0012 0.092 12.9 0.2 21 47 601 627 594 633 0.85

13 13 3.7 2.9e+02 1.6 0.1 21 46 629 654 625 661 0.82

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	6.3	5e+02	0.9	0.0	26	44	211	229	199	233	0.75
2	13	0.35	28	4.9	0.2	21	48	234	261	230	265	0.89
3	13	0.11	8.8	6.5	0.0	23	45	293	315	285	322	0.86
4	13	2.8	2.2e+02	2.0	0.1	21	46	319	344	315	350	0.75
5	13	4.6	3.6e+02	1.4	0.0	22	45	348	371	344	378	0.84
6	13	1.3	1e+02	3.1	0.1	21	46	375	400	371	407	0.86
7	13	0.05	3.9	7.6	0.5	21	51	460	490	451	493	0.86
8	13	3.3	2.6e+02	1.8	0.0	22	52	489	519	484	520	0.85
9	13	0.2	16	5.7	0.1	21	46	516	541	508	547	0.83
10	13	0.94	75	3.6	0.2	21	48	544	571	540	576	0.86
11	13	5.4	4.2e+02	1.1	0.3	21	46	573	598	568	604	0.80
12	13	0.0012	0.092	12.9	0.2	21	47	601	627	594	633	0.85
13	13	3.7	2.9e+02	1.6	0.1	21	46	629	654	625	661	0.82

Sequence Information

Coding Sequence: ATGAATGGTTTCAAAGAAGCATCAAATCCATTATTGAATAATAGAATCGAAAGTAATCCTAATGAATTGTTATCTAATATTAAAATTGAAATCGAAGAATGTAAACTCGAATTCGAGAACTTGCATCAAATTGACTTTTATATGACGAAAAGGGAAAGTTCTGTAGAAAAAGTTTCTCCAACTAAAAGTGATGTCTTAATAAACAATGAAAATATAAAAACTGAAAGTGTTAATTCAAATGAGGGTATTGAAGAAAGAAAAAGTGATATCGAAATTAAGACAGAAATTATACAGCATACATTTGATTTCCCTGTTTGTGCAAATGCTATCCATGTTGAAAATAGACAGACAGGACAAACAATCAAAATGTATCATAGAAAAAAATGTTTCCTATCTGCGCCAAAAAAATGGCAACCTCACATTGGAAAATTCTATGGAACATGTTCCTCTTGTGGACAATTTTTCTGTGATAAATTACTATTTTTAAACCATTTTTATATTTACCACTTTTTAGTTTCTAAAAAATGCGTTACCTTGAGAAGAAATACTTCTGCTACAAAACATATTAAATTTGAATATCTTTGTAATTTAAACCAACAGATGAGGACTCACAGTAGACAAAAATCCTTTAAATCCGAAATTTGTTCAAATTTTTTTATAAATTCCGGTAATTTAAACCGGCATATTAGAACTCACACTGGTGAAAAACCTTTAAGATGTGATATTTGTTCAAAATGTTTCACACAAAAAGCTAGCTTAAAAGAGCATATGAATAGAATTCACACTGGTGAAAAGACGTTTAAATGTGAAAATTGTTCAAAATGTTTCCCACGACAAAGTGATTTAAAACAGCATATTAGATTTCACATTGATAAGAAACCTTTTAAATGTGAAATTTGTTCAAAAAGTTTTATACAATCCAGTAACTTAAAAGGGCATATTAGAACTCACACTGGTGAGAAACCTTTTAAATGTGAAACTTGTTCAAAATATTTCATCCGACAAAGTGATTTACAAAAACACATTAGAATTCATATAGACGAGAAACCTTTTAAATGTGAAACTTGTTCAAAATGTTTTATAGGATCCAGTGATTTAAATAGACATATCAGAACTCACACTGGAGAAAAACCTTTCAGGTGTGAAATTTGTTCAGAATGTTTCACACAAAAAGGTAGCTTAAAAGAGCATTTTCGTAGAATTCACAATGGTGAAAAACCATTTAAATATGAAAATTGTTCAAAATGTTTTCACCGACAAACTGAATTAAAACAGCATAGTAGAATTTACACTGACAAAAAACTTTTTAAATGTGAAATTTGTCCAAAATCTTTTACACAATTTATTCAATTAAAAATGCATTGTAGAATTCACACTGACGAAAAACCATTCAAATGTGAAATTTGTTCAAAATGTTTCACACAATCCTGTCATTTAAAAAGTCATATTAGAATTCACACTGGTGAAAAACCTTTTAAATATAAAATTTGTTCGAAATGTTTCACACAATCCAGTAGTTTAAAATATCATATTAGAACTCACAGTGTCGAGAAACCTTTTAAATGTGAAATTTGTTCAAAATGTTTTATAGGATCCAGTGATTTAAATAGGCATATTAGAACTCACACTGGAGAAAAACCTTTCAGGTGTGAAATTTGTTCAGAATGTTTCACACAAAAAGGTAGCTTAAAAGAGCATATTCGTAGAATTCACACTGGTGAAAAACCATTTACATGTGAAAATTGTTCAAAATGTTTTCACCGACAAACGGAATTAAAACAGCATAGTAGCATTCACACTGACGAAAAACCATTCAAATGTGAAATTTGTTCAAAATGTTTTACACAATCCAGTAGTTTAAAAAGGCATCTTAGAACTCACACTGGTGAAAAGCCTTTCAGGTGTGAAATTTGTTCAAAATATTTCACACAAAAAAGTAGCTTAACATATCATATTATTAGAACTCACACTAATGAAAAACCTTTTAAATGTAATACACTTGTTTAA
Protein Sequence: MNGFKEASNPLLNNRIESNPNELLSNIKIEIEECKLEFENLHQIDFYMTKRESSVEKVSPTKSDVLINNENIKTESVNSNEGIEERKSDIEIKTEIIQHTFDFPVCANAIHVENRQTGQTIKMYHRKKCFLSAPKKWQPHIGKFYGTCSSCGQFFCDKLLFLNHFYIYHFLVSKKCVTLRRNTSATKHIKFEYLCNLNQQMRTHSRQKSFKSEICSNFFINSGNLNRHIRTHTGEKPLRCDICSKCFTQKASLKEHMNRIHTGEKTFKCENCSKCFPRQSDLKQHIRFHIDKKPFKCEICSKSFIQSSNLKGHIRTHTGEKPFKCETCSKYFIRQSDLQKHIRIHIDEKPFKCETCSKCFIGSSDLNRHIRTHTGEKPFRCEICSECFTQKGSLKEHFRRIHNGEKPFKYENCSKCFHRQTELKQHSRIYTDKKLFKCEICPKSFTQFIQLKMHCRIHTDEKPFKCEICSKCFTQSCHLKSHIRIHTGEKPFKYKICSKCFTQSSSLKYHIRTHSVEKPFKCEICSKCFIGSSDLNRHIRTHTGEKPFRCEICSECFTQKGSLKEHIRRIHTGEKPFTCENCSKCFHRQTELKQHSSIHTDEKPFKCEICSKCFTQSSSLKRHLRTHTGEKPFRCEICSKYFTQKSSLTYHIIRTHTNEKPFKCNTLV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00056823;
90% Identity: iTF_00056823;
80% Identity: iTF_00056823;