Avir009459.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Altica viridicyanea
Gene Symbol
-
Assembly
None
Location
GWHAMMQ00000356:338580-346403[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 0.77 24 5.6 2.8 2 23 147 169 147 169 0.90
2 17 0.00057 0.018 15.5 0.2 5 23 214 232 212 232 0.95
3 17 2.2e-06 6.9e-05 23.1 2.5 2 23 239 261 238 261 0.96
4 17 2e-06 6.2e-05 23.2 4.6 1 23 267 289 267 289 0.98
5 17 4.7e-08 1.5e-06 28.3 1.0 1 23 295 317 295 317 0.99
6 17 4.7e-07 1.5e-05 25.2 1.8 1 23 323 345 323 345 0.99
7 17 8.2e-07 2.6e-05 24.4 3.1 1 23 351 373 351 373 0.99
8 17 2.5e-05 0.00079 19.7 3.2 1 23 379 402 379 402 0.98
9 17 0.071 2.2 8.9 1.5 5 21 412 428 411 429 0.91
10 17 0.00023 0.0073 16.7 3.1 1 23 436 458 436 458 0.96
11 17 1.6e-05 0.0005 20.3 8.8 1 23 464 486 464 486 0.99
12 17 2.7e-05 0.00086 19.6 2.2 5 23 496 514 495 514 0.96
13 17 1.9e-07 5.9e-06 26.4 2.3 1 23 520 542 520 542 0.99
14 17 1.6e-06 4.9e-05 23.5 2.1 1 23 548 571 548 571 0.98
15 17 0.003 0.093 13.2 6.6 1 23 577 599 577 599 0.96
16 17 7.2e-08 2.3e-06 27.7 5.5 1 23 605 627 605 627 0.99
17 17 9.3e-06 0.00029 21.1 2.1 1 23 633 656 633 656 0.97

Sequence Information

Coding Sequence
ATGAATGGTTTCAAAGAAGCATCAAATCCATTATTGAATAATAGAATCGAAAGTAATCCTAATGAATTGTTATCTAATATTAAAATTGAAATCGAAGAATGTAAACTCGAATTCGAGAACTTGCATCAAATTGACTTTTATATGACGAAAAGGGAAAGTTCTGTAGAAAAAGTTTCTCCAACTAAAAGTGATGTCTTAATAAACAATGAAAATATAAAAACTGAAAGTGTTAATTCAAATGAGGGTATTGAAGAAAGAAAAAGTGATATCGAAATTAAGACAGAAATTATACAGCATACATTTGATTTCCCTGTTTGTGCAAATGCTATCCATGTTGAAAATAGACAGACAGGACAAACAATCAAAATGTATCATAGAAAAAAATGTTTCCTATCTGCGCCAAAAAAATGGCAACCTCACATTGGAAAATTCTATGGAACATGTTCCTCTTGTGGACAATTTTTCTGTGATAAATTACTATTTTTAAACCATTTTTATATTTACCACTTTTTAGTTTCTAAAAAATGCGTTACCTTGAGAAGAAATACTTCTGCTACAAAACATATTAAATTTGAATATCTTTGTAATTTAAACCAACAGATGAGGACTCACAGTAGACAAAAATCCTTTAAATCCGAAATTTGTTCAAATTTTTTTATAAATTCCGGTAATTTAAACCGGCATATTAGAACTCACACTGGTGAAAAACCTTTAAGATGTGATATTTGTTCAAAATGTTTCACACAAAAAGCTAGCTTAAAAGAGCATATGAATAGAATTCACACTGGTGAAAAGACGTTTAAATGTGAAAATTGTTCAAAATGTTTCCCACGACAAAGTGATTTAAAACAGCATATTAGATTTCACATTGATAAGAAACCTTTTAAATGTGAAATTTGTTCAAAAAGTTTTATACAATCCAGTAACTTAAAAGGGCATATTAGAACTCACACTGGTGAGAAACCTTTTAAATGTGAAACTTGTTCAAAATATTTCATCCGACAAAGTGATTTACAAAAACACATTAGAATTCATATAGACGAGAAACCTTTTAAATGTGAAACTTGTTCAAAATGTTTTATAGGATCCAGTGATTTAAATAGACATATCAGAACTCACACTGGAGAAAAACCTTTCAGGTGTGAAATTTGTTCAGAATGTTTCACACAAAAAGGTAGCTTAAAAGAGCATTTTCGTAGAATTCACAATGGTGAAAAACCATTTAAATATGAAAATTGTTCAAAATGTTTTCACCGACAAACTGAATTAAAACAGCATAGTAGAATTTACACTGACAAAAAACTTTTTAAATGTGAAATTTGTCCAAAATCTTTTACACAATTTATTCAATTAAAAATGCATTGTAGAATTCACACTGACGAAAAACCATTCAAATGTGAAATTTGTTCAAAATGTTTCACACAATCCTGTCATTTAAAAAGTCATATTAGAATTCACACTGGTGAAAAACCTTTTAAATATAAAATTTGTTCGAAATGTTTCACACAATCCAGTAGTTTAAAATATCATATTAGAACTCACAGTGTCGAGAAACCTTTTAAATGTGAAATTTGTTCAAAATGTTTTATAGGATCCAGTGATTTAAATAGGCATATTAGAACTCACACTGGAGAAAAACCTTTCAGGTGTGAAATTTGTTCAGAATGTTTCACACAAAAAGGTAGCTTAAAAGAGCATATTCGTAGAATTCACACTGGTGAAAAACCATTTACATGTGAAAATTGTTCAAAATGTTTTCACCGACAAACGGAATTAAAACAGCATAGTAGCATTCACACTGACGAAAAACCATTCAAATGTGAAATTTGTTCAAAATGTTTTACACAATCCAGTAGTTTAAAAAGGCATCTTAGAACTCACACTGGTGAAAAGCCTTTCAGGTGTGAAATTTGTTCAAAATATTTCACACAAAAAAGTAGCTTAACATATCATATTATTAGAACTCACACTAATGAAAAACCTTTTAAATGTAATACACTTGTTTAA
Protein Sequence
MNGFKEASNPLLNNRIESNPNELLSNIKIEIEECKLEFENLHQIDFYMTKRESSVEKVSPTKSDVLINNENIKTESVNSNEGIEERKSDIEIKTEIIQHTFDFPVCANAIHVENRQTGQTIKMYHRKKCFLSAPKKWQPHIGKFYGTCSSCGQFFCDKLLFLNHFYIYHFLVSKKCVTLRRNTSATKHIKFEYLCNLNQQMRTHSRQKSFKSEICSNFFINSGNLNRHIRTHTGEKPLRCDICSKCFTQKASLKEHMNRIHTGEKTFKCENCSKCFPRQSDLKQHIRFHIDKKPFKCEICSKSFIQSSNLKGHIRTHTGEKPFKCETCSKYFIRQSDLQKHIRIHIDEKPFKCETCSKCFIGSSDLNRHIRTHTGEKPFRCEICSECFTQKGSLKEHFRRIHNGEKPFKYENCSKCFHRQTELKQHSRIYTDKKLFKCEICPKSFTQFIQLKMHCRIHTDEKPFKCEICSKCFTQSCHLKSHIRIHTGEKPFKYKICSKCFTQSSSLKYHIRTHSVEKPFKCEICSKCFIGSSDLNRHIRTHTGEKPFRCEICSECFTQKGSLKEHIRRIHTGEKPFTCENCSKCFHRQTELKQHSSIHTDEKPFKCEICSKCFTQSSSLKRHLRTHTGEKPFRCEICSKYFTQKSSLTYHIIRTHTNEKPFKCNTLV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00057580;
90% Identity
iTF_00057580;
80% Identity
iTF_00057580;