Avir002664.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00000136:277992-285589[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 2.3 1.8e+02 2.3 0.4 17 44 203 231 196 235 0.81 2 9 0.35 28 4.9 0.1 21 48 236 263 225 269 0.85 3 9 0.0056 0.44 10.7 0.0 26 46 309 329 302 336 0.85 4 9 0.013 1 9.5 0.1 22 45 361 384 353 391 0.84 5 9 0.77 61 3.8 0.0 21 45 388 412 384 417 0.88 6 9 3.9 3.1e+02 1.6 1.1 21 46 417 442 412 447 0.88 7 9 4.8 3.8e+02 1.3 0.0 21 43 473 496 465 503 0.73 8 9 0.0033 0.26 11.4 0.4 21 46 498 523 489 529 0.82 9 9 1.5 1.2e+02 2.9 0.1 21 45 526 550 522 557 0.82
Sequence Information
- Coding Sequence
- ATGGATGGTTTCAAAGAAGCATCAAATCCATTATTGAATAATAGAATCGAAAGTAACCCTAAAGAATTGTTGTCTAATATTAAAACCGAAGAAATGGAAGTCGAAGAATGTAAACCCGAATTCGAGAAGTTGTATCAATTTAACTTTTATATGACGAAAAGGGAAAGTTCTGTAGAAAAAGTTTCTCCAACTAAAAGTGATGTGTTAATAAGCAACGAAAATATAAAAACTGAAAGTGTTAATTTAAATGAGGATATTCAAGAAAGAAAAAGTGATATCGGAATTAAGACAGACATTATACAGCGTACATTTGTTTTTCCTGCTATCCATGATTTTGTTGAAAATAGACAGACAGTACAAACAATCAAAATGTATCCTAGGAAAAAATGTTTCCTATCTGCGCCAAAAAAATGGCAACCTCACATTGGAAAATTCTATGGAACCTGTTCATCTTGTGGACAATTTTTCTGTGATAAATTGCTATTTTTAAAGCATTTTTATATTTACCACTTTTTAGTTAATTCTAAAAAATGTGTTAACTTGAGAAGAAATAATTCTGCTACAAAACATATTAAATTAGAAGATCTTGGTAATTTAAACCAACAGATGAGGACTCAAAGTGGACAAAAATCCTGTAAATGCGAAATTTGTTCAAAATTTTTTATAAATTGCGGTACTTTAAACCGGCATATTAGAACTCATACTGGTGAAAAACCTTTTAGATGTGATATTTGTTCAAAATGTTTCACACAAAAAGGTAGCTTAAAAGAGCATGTTAATAGAATTCACACTGGTGAAAAGCCGTTTAAATGTGAAAATTGTTCAAAACGTTTCCCACGACAAAGTGATTTAAAACAGCATATTAGATTTCACACTACCAAGAAACCTTTTATATGTGAAATTGACACTGAAGCGAAACGTTTTAAATGTCAAATTTGTTCTAAAAGTTTTAGACAATCAAATGATTTAAAAAGGCATATTAGAACTCACACTGGTGAAAAACCTTTTAAATATGAAACTTGTTCAAAATATTTCACACGACAAATTGATTTACAAAAACATATTAGAATTCATACTGACCAGAAACCTTTTAAATGTGAAATTTGTTCAAAATGTTTTATACAATCCAATGATTTAAAAAGGCATATTACAACTCACACTGGTGAAAAACCTTTCGGATGTGAAATTTGTTCTAAATGTTTCACACAAAAAGGTAGCTTAAAAGAACATATTAGTAGAATTCACACTGGTGAAAGGCCATTTAAATGTAAAAATTGTTCAAAATGTTTTCACCGACAAAGGGAATTAAAACAGCATATTAGAATTCACACTGACGAAAAACTTTTTAAATGTAAAATTTGTCCAAAATCTTTTACACAATTCATTCAATTAAAAATGCATAATAGAATTCACACTGACGAAAAACCATTTAAATGTACAATTTGTTTAAAATCTTTCATAGATTTAAAAAGGCATGCTAGAACTCACACTGGTGAAAAATCATTCAAATGTGAAATTTGTTCAAAATGTTTTACACAATCCAGTAATTTAAAAAGGCATATTAGAACTCACACTGGTGAAAAACCTTTCAGTTGTGAAATTTGTTCAAAATATTTCACACAAAAAAGTAGCTTAACATATCATATTAGAACTCACACTAATGAGAAACCTCTTAAATGTAGTTAA
- Protein Sequence
- MDGFKEASNPLLNNRIESNPKELLSNIKTEEMEVEECKPEFEKLYQFNFYMTKRESSVEKVSPTKSDVLISNENIKTESVNLNEDIQERKSDIGIKTDIIQRTFVFPAIHDFVENRQTVQTIKMYPRKKCFLSAPKKWQPHIGKFYGTCSSCGQFFCDKLLFLKHFYIYHFLVNSKKCVNLRRNNSATKHIKLEDLGNLNQQMRTQSGQKSCKCEICSKFFINCGTLNRHIRTHTGEKPFRCDICSKCFTQKGSLKEHVNRIHTGEKPFKCENCSKRFPRQSDLKQHIRFHTTKKPFICEIDTEAKRFKCQICSKSFRQSNDLKRHIRTHTGEKPFKYETCSKYFTRQIDLQKHIRIHTDQKPFKCEICSKCFIQSNDLKRHITTHTGEKPFGCEICSKCFTQKGSLKEHISRIHTGERPFKCKNCSKCFHRQRELKQHIRIHTDEKLFKCKICPKSFTQFIQLKMHNRIHTDEKPFKCTICLKSFIDLKRHARTHTGEKSFKCEICSKCFTQSSNLKRHIRTHTGEKPFSCEICSKYFTQKSSLTYHIRTHTNEKPLKCS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00056903;
- 90% Identity
- iTF_00056903;
- 80% Identity
- iTF_00056903;