Basic Information

Insect: Altica viridicyanea
Gene Symbol: -
Assembly: None
Location: GWHAMMQ00000136:277992-285589[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.43 13 6.4 3.2 2 23 148 170 148 170 0.91

2 13 3.3e-05 0.001 19.3 5.6 2 23 213 234 212 234 0.97

3 13 3.6e-06 0.00011 22.4 2.7 1 23 240 263 240 263 0.97

4 13 7.8e-07 2.4e-05 24.5 2.5 1 23 269 291 269 291 0.98

5 13 3.9e-08 1.2e-06 28.6 3.0 1 23 308 330 308 330 0.99

6 13 0.00028 0.0088 16.4 0.3 5 23 340 358 339 358 0.96

7 13 1.2e-06 3.9e-05 23.8 3.5 1 23 364 386 364 386 0.99

8 13 2e-05 0.00061 20.1 1.8 3 23 394 415 392 415 0.96

9 13 4.7e-05 0.0015 18.9 8.2 1 23 421 443 421 443 0.99

10 13 8.9e-06 0.00028 21.2 1.9 1 23 449 471 449 471 0.98

11 13 0.017 0.52 10.9 1.6 1 23 477 496 477 496 0.95

12 13 9.8e-09 3.1e-07 30.5 5.1 1 23 502 524 502 524 0.99

13 13 7.5e-07 2.4e-05 24.5 2.5 1 23 530 552 530 552 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.43	13	6.4	3.2	2	23	148	170	148	170	0.91
2	13	3.3e-05	0.001	19.3	5.6	2	23	213	234	212	234	0.97
3	13	3.6e-06	0.00011	22.4	2.7	1	23	240	263	240	263	0.97
4	13	7.8e-07	2.4e-05	24.5	2.5	1	23	269	291	269	291	0.98
5	13	3.9e-08	1.2e-06	28.6	3.0	1	23	308	330	308	330	0.99
6	13	0.00028	0.0088	16.4	0.3	5	23	340	358	339	358	0.96
7	13	1.2e-06	3.9e-05	23.8	3.5	1	23	364	386	364	386	0.99
8	13	2e-05	0.00061	20.1	1.8	3	23	394	415	392	415	0.96
9	13	4.7e-05	0.0015	18.9	8.2	1	23	421	443	421	443	0.99
10	13	8.9e-06	0.00028	21.2	1.9	1	23	449	471	449	471	0.98
11	13	0.017	0.52	10.9	1.6	1	23	477	496	477	496	0.95
12	13	9.8e-09	3.1e-07	30.5	5.1	1	23	502	524	502	524	0.99
13	13	7.5e-07	2.4e-05	24.5	2.5	1	23	530	552	530	552	0.98

Sequence Information

Coding Sequence: ATGGATGGTTTCAAAGAAGCATCAAATCCATTATTGAATAATAGAATCGAAAGTAACCCTAAAGAATTGTTGTCTAATATTAAAACCGAAGAAATGGAAGTCGAAGAATGTAAACCCGAATTCGAGAAGTTGTATCAATTTAACTTTTATATGACGAAAAGGGAAAGTTCTGTAGAAAAAGTTTCTCCAACTAAAAGTGATGTGTTAATAAGCAACGAAAATATAAAAACTGAAAGTGTTAATTTAAATGAGGATATTCAAGAAAGAAAAAGTGATATCGGAATTAAGACAGACATTATACAGCGTACATTTGTTTTTCCTGCTATCCATGATTTTGTTGAAAATAGACAGACAGTACAAACAATCAAAATGTATCCTAGGAAAAAATGTTTCCTATCTGCGCCAAAAAAATGGCAACCTCACATTGGAAAATTCTATGGAACCTGTTCATCTTGTGGACAATTTTTCTGTGATAAATTGCTATTTTTAAAGCATTTTTATATTTACCACTTTTTAGTTAATTCTAAAAAATGTGTTAACTTGAGAAGAAATAATTCTGCTACAAAACATATTAAATTAGAAGATCTTGGTAATTTAAACCAACAGATGAGGACTCAAAGTGGACAAAAATCCTGTAAATGCGAAATTTGTTCAAAATTTTTTATAAATTGCGGTACTTTAAACCGGCATATTAGAACTCATACTGGTGAAAAACCTTTTAGATGTGATATTTGTTCAAAATGTTTCACACAAAAAGGTAGCTTAAAAGAGCATGTTAATAGAATTCACACTGGTGAAAAGCCGTTTAAATGTGAAAATTGTTCAAAACGTTTCCCACGACAAAGTGATTTAAAACAGCATATTAGATTTCACACTACCAAGAAACCTTTTATATGTGAAATTGACACTGAAGCGAAACGTTTTAAATGTCAAATTTGTTCTAAAAGTTTTAGACAATCAAATGATTTAAAAAGGCATATTAGAACTCACACTGGTGAAAAACCTTTTAAATATGAAACTTGTTCAAAATATTTCACACGACAAATTGATTTACAAAAACATATTAGAATTCATACTGACCAGAAACCTTTTAAATGTGAAATTTGTTCAAAATGTTTTATACAATCCAATGATTTAAAAAGGCATATTACAACTCACACTGGTGAAAAACCTTTCGGATGTGAAATTTGTTCTAAATGTTTCACACAAAAAGGTAGCTTAAAAGAACATATTAGTAGAATTCACACTGGTGAAAGGCCATTTAAATGTAAAAATTGTTCAAAATGTTTTCACCGACAAAGGGAATTAAAACAGCATATTAGAATTCACACTGACGAAAAACTTTTTAAATGTAAAATTTGTCCAAAATCTTTTACACAATTCATTCAATTAAAAATGCATAATAGAATTCACACTGACGAAAAACCATTTAAATGTACAATTTGTTTAAAATCTTTCATAGATTTAAAAAGGCATGCTAGAACTCACACTGGTGAAAAATCATTCAAATGTGAAATTTGTTCAAAATGTTTTACACAATCCAGTAATTTAAAAAGGCATATTAGAACTCACACTGGTGAAAAACCTTTCAGTTGTGAAATTTGTTCAAAATATTTCACACAAAAAAGTAGCTTAACATATCATATTAGAACTCACACTAATGAGAAACCTCTTAAATGTAGTTAA
Protein Sequence: MDGFKEASNPLLNNRIESNPKELLSNIKTEEMEVEECKPEFEKLYQFNFYMTKRESSVEKVSPTKSDVLISNENIKTESVNLNEDIQERKSDIGIKTDIIQRTFVFPAIHDFVENRQTVQTIKMYPRKKCFLSAPKKWQPHIGKFYGTCSSCGQFFCDKLLFLKHFYIYHFLVNSKKCVNLRRNNSATKHIKLEDLGNLNQQMRTQSGQKSCKCEICSKFFINCGTLNRHIRTHTGEKPFRCDICSKCFTQKGSLKEHVNRIHTGEKPFKCENCSKRFPRQSDLKQHIRFHTTKKPFICEIDTEAKRFKCQICSKSFRQSNDLKRHIRTHTGEKPFKYETCSKYFTRQIDLQKHIRIHTDQKPFKCEICSKCFIQSNDLKRHITTHTGEKPFGCEICSKCFTQKGSLKEHISRIHTGERPFKCKNCSKCFHRQRELKQHIRIHTDEKLFKCKICPKSFTQFIQLKMHNRIHTDEKPFKCTICLKSFIDLKRHARTHTGEKSFKCEICSKCFTQSSNLKRHIRTHTGEKPFSCEICSKYFTQKSSLTYHIRTHTNEKPLKCS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00057564;
90% Identity: iTF_00057564;
80% Identity: iTF_00057564;