Basic Information

Insect: Altica viridicyanea
Gene Symbol: -
Assembly: None
Location: GWHAMMQ00001617:977-3936[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 2.2 1.8e+02 2.4 0.1 26 49 218 241 211 244 0.80

2 12 0.0044 0.35 11.0 0.7 21 50 241 270 238 274 0.86

3 12 1.1 90 3.3 0.1 22 45 298 321 293 328 0.85

4 12 0.61 48 4.2 0.2 21 48 325 352 321 358 0.86

5 12 0.77 61 3.8 0.1 22 51 355 384 352 387 0.84

6 12 1.5 1.2e+02 2.9 0.1 22 44 383 405 378 409 0.89

7 12 0.013 1 9.5 0.0 21 45 410 434 406 437 0.90

8 12 0.017 1.3 9.2 0.2 21 45 438 462 435 469 0.87

9 12 0.072 5.7 7.1 0.1 21 47 466 492 462 498 0.85

10 12 3 2.4e+02 1.9 0.0 23 51 496 524 493 525 0.83

11 12 2.4 1.9e+02 2.3 0.1 21 47 522 548 519 553 0.82

12 12 0.4 31 4.8 0.9 21 47 550 576 546 580 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	2.2	1.8e+02	2.4	0.1	26	49	218	241	211	244	0.80
2	12	0.0044	0.35	11.0	0.7	21	50	241	270	238	274	0.86
3	12	1.1	90	3.3	0.1	22	45	298	321	293	328	0.85
4	12	0.61	48	4.2	0.2	21	48	325	352	321	358	0.86
5	12	0.77	61	3.8	0.1	22	51	355	384	352	387	0.84
6	12	1.5	1.2e+02	2.9	0.1	22	44	383	405	378	409	0.89
7	12	0.013	1	9.5	0.0	21	45	410	434	406	437	0.90
8	12	0.017	1.3	9.2	0.2	21	45	438	462	435	469	0.87
9	12	0.072	5.7	7.1	0.1	21	47	466	492	462	498	0.85
10	12	3	2.4e+02	1.9	0.0	23	51	496	524	493	525	0.83
11	12	2.4	1.9e+02	2.3	0.1	21	47	522	548	519	553	0.82
12	12	0.4	31	4.8	0.9	21	47	550	576	546	580	0.89

Sequence Information

Coding Sequence: ATGGATGGTTTCAAAGAAGCATCAGATTCATTAATGAATAATAAAATCGAAAGTAATCCTAACGAACTATTATCTAATATTAAAACCGAAGAAATTGAAATTGAAGAATGTCAACTCGAATTCGATAACTTGCATCAAATTGAGTATTATATGATGAAAAGGGAAACTTGTGAAGAAACTAAAAGTGATGTTTTAATAAGCACAGAAAATATAAAAACTGAAAATATTAATTCAAATGATGGTATTCAAGAAAGAAAAAGCGATATCAAAATTAAGAAATTTGATTTTCCTGTTTGTACAAAAGTTATGCATGGTTTTGTTGAAAACCGACAAACAGTGCAAACAGTCAAAATGTATTCTAGGAAAAAATGTTTCCTATCTGCGGCAAAAAAATGGTATCATTTTGAGAGATTCAATGGAACATGTTTGTATTGTGGACAATTTTTTTGTGATAAATTGTTATTTTTATATCATTTTAGTATTTACCACTTTATAGTTAAATCTAAAAAATCTGTTGATTTGAGAATGAATAATTCTGCTACTAAACATATTGGACAAATATCCTTTAAATGCGAAATTTGTTCAAAATACTTCAAAGATCAAAATTATTTAAATCAGCATATTATACTTCACACTGGAGAAAAATTATTTAAATGTGAATATTGTTCGAAATGTTTCACAAAATCCAAGCGTTTGAAAAGGCATATGATAATTCACACTAACGAGAAACCTTTTAAATGTGAAATTTGTGCAAAATGTTTCCGAAGATCTGATTGTTTGAAAAGGCATATTATGATTCACACTGGTAAAAAACCGTTCAGATGTAAAATTTGTTCAAAATGTTTCACATTTTCCAGTTATTTAAAAATTCATATTAGAGTTCACACTGGTAAAAAACCTTTTAAATGTAAAATTTGTTTAAAATGTTTCACAAAATCCAGTAGTTTAAAAACTCATATTAGAACTCACACTGGTGAAAAACCTTTTAGATGTGAAATTTGTTCAAAATGTTATGTAGAAAAAAGTAACTTAAAACAGCATATTGTTAGAGATCACATTGATGAAAAGTCATTGAAATGTGAAATTTGTTCAAACTGTTTCTCACAACAAAAGGATTTAAATCAACACATTCGAATTCATACTGGTGACAAACCTTTTAAATGTAAAATTTGTCTGAAAGGTTTTCAAAGTGCCAGTCATTTAAAAAGGCATATCAGAACTCACACTGGCGAGAAACCTTTTAAATGTAAAATTTGTTTAAAATGTTTCAAAACATCTAGTGATTTAAAAAGGCATGTTGGAATTCACACTAACGAGAGACCTTTTAAATGTAAAATTTGTTCAAAATGTTTCACACAATCAAGTAATTTAAATAGTCATGTTAGAACTCACACTGGTGAGAAACCTTTTAAATGTGAAATTTGTTCAAAATGTTTCACTGATCAAAGTAATTTGAAAAAGCATATTAGAATTCACATTGACAAGAAACCTTTTAAATGTGAAATTTGTTCAAAATGTTTTATAGAATCCAGTAAATTAAAAAGCCATATGATAATTCACAATAACGAGAAACCTTTTAAATGTAAAATTTGTTCAAAATGTTTCAAATCCCAAAGTTATTTAAAAGTGCATATTAGAATTCATACTGACGAAAAACCTTTTAGGTGTGAAATTTGTTTAAAATGTTTCAGATACCAAAATTCTTTAAAACAACATACTAGACTTCACACTTGTGAAAAATAA
Protein Sequence: MDGFKEASDSLMNNKIESNPNELLSNIKTEEIEIEECQLEFDNLHQIEYYMMKRETCEETKSDVLISTENIKTENINSNDGIQERKSDIKIKKFDFPVCTKVMHGFVENRQTVQTVKMYSRKKCFLSAAKKWYHFERFNGTCLYCGQFFCDKLLFLYHFSIYHFIVKSKKSVDLRMNNSATKHIGQISFKCEICSKYFKDQNYLNQHIILHTGEKLFKCEYCSKCFTKSKRLKRHMIIHTNEKPFKCEICAKCFRRSDCLKRHIMIHTGKKPFRCKICSKCFTFSSYLKIHIRVHTGKKPFKCKICLKCFTKSSSLKTHIRTHTGEKPFRCEICSKCYVEKSNLKQHIVRDHIDEKSLKCEICSNCFSQQKDLNQHIRIHTGDKPFKCKICLKGFQSASHLKRHIRTHTGEKPFKCKICLKCFKTSSDLKRHVGIHTNERPFKCKICSKCFTQSSNLNSHVRTHTGEKPFKCEICSKCFTDQSNLKKHIRIHIDKKPFKCEICSKCFIESSKLKSHMIIHNNEKPFKCKICSKCFKSQSYLKVHIRIHTDEKPFRCEICLKCFRYQNSLKQHTRLHTCEK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00056848;
90% Identity: iTF_00056839;
80% Identity: iTF_00056848;