Avir003965.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Altica viridicyanea
Gene Symbol
-
Assembly
None
Location
GWHAMMQ00001617:977-3936[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 0.34 10 6.8 2.4 2 23 141 163 141 163 0.90
2 15 1.4e-05 0.00042 20.6 1.3 1 23 189 211 189 211 0.97
3 15 1.8e-05 0.00056 20.2 6.1 1 23 217 239 217 239 0.98
4 15 5.5e-06 0.00017 21.8 5.2 1 23 245 267 245 267 0.98
5 15 1.6e-06 5e-05 23.5 4.8 1 23 273 295 273 295 0.99
6 15 1.7e-06 5.2e-05 23.5 6.1 1 23 301 323 301 323 0.99
7 15 1.8e-05 0.00057 20.2 2.1 1 23 329 352 329 352 0.96
8 15 1.2e-05 0.00038 20.7 2.3 2 23 359 380 358 380 0.97
9 15 1.2e-06 3.7e-05 23.9 3.4 1 23 386 408 386 408 0.99
10 15 4.4e-06 0.00014 22.1 3.5 1 23 414 436 414 436 0.96
11 15 1.3e-07 4e-06 27.0 5.3 1 23 442 464 442 464 0.99
12 15 1.3e-08 4e-07 30.1 3.9 1 23 470 492 470 492 0.99
13 15 5.3e-06 0.00017 21.9 2.3 1 23 498 520 498 520 0.98
14 15 2.2e-07 7e-06 26.2 4.9 1 23 526 548 526 548 0.99
15 15 0.00012 0.0037 17.6 5.3 1 23 554 576 554 576 0.98

Sequence Information

Coding Sequence
ATGGATGGTTTCAAAGAAGCATCAGATTCATTAATGAATAATAAAATCGAAAGTAATCCTAACGAACTATTATCTAATATTAAAACCGAAGAAATTGAAATTGAAGAATGTCAACTCGAATTCGATAACTTGCATCAAATTGAGTATTATATGATGAAAAGGGAAACTTGTGAAGAAACTAAAAGTGATGTTTTAATAAGCACAGAAAATATAAAAACTGAAAATATTAATTCAAATGATGGTATTCAAGAAAGAAAAAGCGATATCAAAATTAAGAAATTTGATTTTCCTGTTTGTACAAAAGTTATGCATGGTTTTGTTGAAAACCGACAAACAGTGCAAACAGTCAAAATGTATTCTAGGAAAAAATGTTTCCTATCTGCGGCAAAAAAATGGTATCATTTTGAGAGATTCAATGGAACATGTTTGTATTGTGGACAATTTTTTTGTGATAAATTGTTATTTTTATATCATTTTAGTATTTACCACTTTATAGTTAAATCTAAAAAATCTGTTGATTTGAGAATGAATAATTCTGCTACTAAACATATTGGACAAATATCCTTTAAATGCGAAATTTGTTCAAAATACTTCAAAGATCAAAATTATTTAAATCAGCATATTATACTTCACACTGGAGAAAAATTATTTAAATGTGAATATTGTTCGAAATGTTTCACAAAATCCAAGCGTTTGAAAAGGCATATGATAATTCACACTAACGAGAAACCTTTTAAATGTGAAATTTGTGCAAAATGTTTCCGAAGATCTGATTGTTTGAAAAGGCATATTATGATTCACACTGGTAAAAAACCGTTCAGATGTAAAATTTGTTCAAAATGTTTCACATTTTCCAGTTATTTAAAAATTCATATTAGAGTTCACACTGGTAAAAAACCTTTTAAATGTAAAATTTGTTTAAAATGTTTCACAAAATCCAGTAGTTTAAAAACTCATATTAGAACTCACACTGGTGAAAAACCTTTTAGATGTGAAATTTGTTCAAAATGTTATGTAGAAAAAAGTAACTTAAAACAGCATATTGTTAGAGATCACATTGATGAAAAGTCATTGAAATGTGAAATTTGTTCAAACTGTTTCTCACAACAAAAGGATTTAAATCAACACATTCGAATTCATACTGGTGACAAACCTTTTAAATGTAAAATTTGTCTGAAAGGTTTTCAAAGTGCCAGTCATTTAAAAAGGCATATCAGAACTCACACTGGCGAGAAACCTTTTAAATGTAAAATTTGTTTAAAATGTTTCAAAACATCTAGTGATTTAAAAAGGCATGTTGGAATTCACACTAACGAGAGACCTTTTAAATGTAAAATTTGTTCAAAATGTTTCACACAATCAAGTAATTTAAATAGTCATGTTAGAACTCACACTGGTGAGAAACCTTTTAAATGTGAAATTTGTTCAAAATGTTTCACTGATCAAAGTAATTTGAAAAAGCATATTAGAATTCACATTGACAAGAAACCTTTTAAATGTGAAATTTGTTCAAAATGTTTTATAGAATCCAGTAAATTAAAAAGCCATATGATAATTCACAATAACGAGAAACCTTTTAAATGTAAAATTTGTTCAAAATGTTTCAAATCCCAAAGTTATTTAAAAGTGCATATTAGAATTCATACTGACGAAAAACCTTTTAGGTGTGAAATTTGTTTAAAATGTTTCAGATACCAAAATTCTTTAAAACAACATACTAGACTTCACACTTGTGAAAAATAA
Protein Sequence
MDGFKEASDSLMNNKIESNPNELLSNIKTEEIEIEECQLEFDNLHQIEYYMMKRETCEETKSDVLISTENIKTENINSNDGIQERKSDIKIKKFDFPVCTKVMHGFVENRQTVQTVKMYSRKKCFLSAAKKWYHFERFNGTCLYCGQFFCDKLLFLYHFSIYHFIVKSKKSVDLRMNNSATKHIGQISFKCEICSKYFKDQNYLNQHIILHTGEKLFKCEYCSKCFTKSKRLKRHMIIHTNEKPFKCEICAKCFRRSDCLKRHIMIHTGKKPFRCKICSKCFTFSSYLKIHIRVHTGKKPFKCKICLKCFTKSSSLKTHIRTHTGEKPFRCEICSKCYVEKSNLKQHIVRDHIDEKSLKCEICSNCFSQQKDLNQHIRIHTGDKPFKCKICLKGFQSASHLKRHIRTHTGEKPFKCKICLKCFKTSSDLKRHVGIHTNERPFKCKICSKCFTQSSNLNSHVRTHTGEKPFKCEICSKCFTDQSNLKKHIRIHIDKKPFKCEICSKCFIESSKLKSHMIIHNNEKPFKCKICSKCFKSQSYLKVHIRIHTDEKPFRCEICLKCFRYQNSLKQHTRLHTCEK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00056848;
90% Identity
iTF_00057545; iTF_00057551; iTF_00056848;
80% Identity
iTF_00056848;