Basic Information

Insect: Altica viridicyanea
Gene Symbol: -
Assembly: None
Location: GWHAMMQ00000881:108962-111284[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 2.1 1.7e+02 2.4 0.1 26 49 218 241 211 244 0.80

2 11 0.004 0.32 11.1 0.6 21 49 241 269 237 273 0.86

3 11 1 81 3.4 0.1 22 45 298 321 289 328 0.86

4 11 0.67 53 4.0 0.3 21 48 325 352 321 355 0.86

5 11 0.84 67 3.7 0.2 22 48 355 381 350 385 0.83

6 11 1.5 1.2e+02 2.9 0.0 22 44 383 405 380 409 0.89

7 11 0.0092 0.73 10.0 0.0 21 46 410 435 406 441 0.88

8 11 0.016 1.3 9.2 0.2 21 45 438 462 435 469 0.87

9 11 0.062 4.9 7.3 0.1 21 47 466 492 461 499 0.85

10 11 2.3 1.8e+02 2.3 0.1 23 52 496 525 490 526 0.85

11 11 4.1 3.2e+02 1.5 0.1 21 45 522 546 519 549 0.83

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	2.1	1.7e+02	2.4	0.1	26	49	218	241	211	244	0.80
2	11	0.004	0.32	11.1	0.6	21	49	241	269	237	273	0.86
3	11	1	81	3.4	0.1	22	45	298	321	289	328	0.86
4	11	0.67	53	4.0	0.3	21	48	325	352	321	355	0.86
5	11	0.84	67	3.7	0.2	22	48	355	381	350	385	0.83
6	11	1.5	1.2e+02	2.9	0.0	22	44	383	405	380	409	0.89
7	11	0.0092	0.73	10.0	0.0	21	46	410	435	406	441	0.88
8	11	0.016	1.3	9.2	0.2	21	45	438	462	435	469	0.87
9	11	0.062	4.9	7.3	0.1	21	47	466	492	461	499	0.85
10	11	2.3	1.8e+02	2.3	0.1	23	52	496	525	490	526	0.85
11	11	4.1	3.2e+02	1.5	0.1	21	45	522	546	519	549	0.83

Sequence Information

Coding Sequence: ATGGATGGTTTCAAAGAAGCATCAGATTCATTAATGAATAATAAAATCGAAAGTAATCCTAACGAACTATTATCTAATATTAAAACCGAAGAAATTGAAATTGAAGAATGTCAACTCGAATTCGATAACTTGCATCAAATTGAGTATTATATGATGAAAAGGGAAACTTGTGAAGAAACTAAAAGTGATGTTTTAATAAGCACAGAAAATATAAAAACTGAAAATATTAATTCAAATGATGGTATTCAAGAAAGAAAAAGCGATATCAAAATTAAGAAATTTGATTTTCCTGTTTGTACAAAAGTTATGCATGGTTTTGTTGAAAACCGACAAACAGTGCAAACAGTCAAAATGTATTCTAGGAAAAAATGTTTCCTATCTGCGGCAAAAAAATGGTATCATTTTGAGAGATTCAATGGAACATGTTTGTATTGTGGACAATTTTTTTGTGATAAATTGTTATTTTTATATCATTTTAGTATTTACCACTTTATAGTTAAATCTAAAAAATCTGTTGATTTGAGAATGAATAATTCTGCTACTAAACATATTGGACAAATATCCTTTAAATGCGAAATTTGTTCAAAATACTTCAAAGATCAAAATTATTTAAATCAGCATATTATACTTCACACTGGAGAAAAATTATTTAAATGTGAATATTGTTCGAAATGTTTCACAAAATCCAAGCGTTTGAAAAGGCATATGATAATTCACACTAACGAGAAACCTTTTAAATGTGAAATTTGTGCAAAATGTTTCCGAAGATCTGATTGTTTGAAAAGGCATATTATGATTCACACTGGTAAAAAACCGTTCAGATGTAAAATTTGTTCAAAATGTTTCACATTTTCCAGTTATTTAAAAATTCATATTAGAGTTCACACTGGTAAAAAACCTTTTAAATGTAAAATTTGTTTAAAATGTTTCACAAAATCCAGTAGTTTAAAAACTCATATTAGAACTCACACTGGTGAAAAACCTTTTAGATGTGAAATTTGTTCAAAATGTTATGTAGAAAAAAGTAACTTAAAACAGCATATTGTTAGAGATCACATTGATGAAAAGTCATTGAAATGTGAAATTTGTTCAAACTGTTTCTCACAACAAAAGGATTTAAATCAACACATTCGAATTCATACTGGTGACAAACCTTTTAAATGTAAAATTTGTCTGAAAGGTTTTCAAAGTGCCAGTCATTTAAAAAGGCATATCAGAACTCACACTGGCGAGAAACCTTTTAAATGTAAAATTTGTTTAAAATGTTTCAAAACATCTAGTGATTTAAAAAGGCATGTTGGAATTCACACTAACGAGAGACCTTTTAAATGTAAAATTTGTTCAAAATGTTTCACACAATCAAGTAATTTAAATAGTCATGTTAGAACTCACACTGGTGAGAAACCTTTTAAATGTGAAATTTGTTCAAAATGTTTCACTGATCAAAGTAATTTGAAAAAGCATATTAGAATTCACATTGACAAGAAACCTTTTAAATGTGAAATTTGTTCAAAATGTTTTATAGAATCCAGTAAATTAAAAAGCCATATGATAATTCACAATAACGAGAAACCTTTTAAATGTAAAATTTGTTCAAAATGTTTCAAATCCCAAAGTTATTTAAAAGTGCATATTAGAATTCATACTGACGAAAAACTTTTAGGTGTGAAATTTGTTTAA
Protein Sequence: MDGFKEASDSLMNNKIESNPNELLSNIKTEEIEIEECQLEFDNLHQIEYYMMKRETCEETKSDVLISTENIKTENINSNDGIQERKSDIKIKKFDFPVCTKVMHGFVENRQTVQTVKMYSRKKCFLSAAKKWYHFERFNGTCLYCGQFFCDKLLFLYHFSIYHFIVKSKKSVDLRMNNSATKHIGQISFKCEICSKYFKDQNYLNQHIILHTGEKLFKCEYCSKCFTKSKRLKRHMIIHTNEKPFKCEICAKCFRRSDCLKRHIMIHTGKKPFRCKICSKCFTFSSYLKIHIRVHTGKKPFKCKICLKCFTKSSSLKTHIRTHTGEKPFRCEICSKCYVEKSNLKQHIVRDHIDEKSLKCEICSNCFSQQKDLNQHIRIHTGDKPFKCKICLKGFQSASHLKRHIRTHTGEKPFKCKICLKCFKTSSDLKRHVGIHTNERPFKCKICSKCFTQSSNLNSHVRTHTGEKPFKCEICSKCFTDQSNLKKHIRIHIDKKPFKCEICSKCFIESSKLKSHMIIHNNEKPFKCKICSKCFKSQSYLKVHIRIHTDEKLLGVKFV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00056848;
90% Identity: iTF_00056839;
80% Identity: iTF_00056848;