Avir017543.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00000975:81955-99735[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.065 5.1 7.3 0.2 22 45 166 189 156 196 0.83 2 9 0.23 19 5.5 0.1 21 48 193 220 188 224 0.85 3 9 0.41 32 4.7 0.2 21 45 221 245 219 252 0.87 4 9 0.18 14 5.8 0.0 21 44 249 272 245 277 0.90 5 9 0.0035 0.28 11.3 0.1 21 45 277 301 273 308 0.86 6 9 0.13 10 6.3 0.4 21 46 305 332 300 340 0.79 7 9 4.3 3.4e+02 1.4 0.0 21 44 363 386 359 391 0.89 8 9 0.063 5 7.3 0.3 21 45 391 415 387 423 0.86 9 9 2.8 2.2e+02 2.1 0.2 22 46 420 444 415 451 0.82
Sequence Information
- Coding Sequence
- ATGGATGATTCTTCAATAAATTCTGTCACTATTAAAAGTGAAAATGATATTTCTAGTCAAACTAATCATGAAATCAATATTGAAATTGACATTAAAAAAGAAGAATTGCACTCTGTTTGTGATTTACCGGATTTTAAAATGGAATTTCCAGATTTTGATGGAGAATTAAATTTAGAGCGAAGCATTAAAAGATATTCGAGGAAACAGGATCCAAATTATAAAAAACGTTTCCTATCTGCGGCAACAAAATGGCAACCTCACTTTGGAAAATTTTATGGAACATGTTCATCTTGTGGAAAATTTTTCTATGATAAATTGTTATTTTTAAACCATTATTATATTTACCACTTTTTCGTTAATTCGAAAAAATCTGTTAACTTAAAAAGGAATAATTCTGGCATAAAACATATTAACCGAAAAAACGATCTTAGTAATGTAAACAAACATATAAGGGCAGACAGTTTCACACAACAAAGTGATTTAAAAAAATATTGCGAAAAACGTTTTAAATGTAAGATTTGTTCAAAATGTTTCACTCAATCCTATAATTTAAAAAGTCATATTAGAACTCATACTGACGAGAAACCTTTTAAATGTAAATTATGTTCGAAATGTTTCACAGTTTCCAGTGGATTAAAACGTCATATTAGAATTCACACTGGTGAGAAACCTTTTAAATGTAAATTATGTTCGAAATGTTTCACACAATCCTGTCATTTAAAAAGTCATATTAGAACTCATACTGACGAGAAACCTTTTAAATGTAAATTATGTTCGAAATGTTTCACAAAATCCAGTAATTTAAAAACTCATATTAGAACTCATACTGACGAGAAACCTTTTAAATGTGAAATATGTTCGAAATGTTTCACACAATCCAGTAACTTAAAAACTCATATTAGAACTCATACTGACGAGAAACCTTTTAAATGTAAAATATGTTCGAAATGTTTCACTCGATCCGAATCCAGTAATTTAAATAGACATATTAGAATTCACACAGACGAGAAACGTTTTAAATGTAAAATATGTTCGAAATGTTTCATAGATTCCAGTGGATTAAAAGGTCATATTAGAATTCACACTGGTGAGAAACCTTTTAAATGTAAATTATGTTCGAAATGTTTCACACAACTCAGTGACTTAAAAACTCATATTAGAACTCACACTGGCGAAAAACCTTTTAAATGTAAAATTTGTTCAAAATGTTTCACACACTCCTGTAATTTAAAAAGTCATATTAGAACTCATACTGACGAGAAACATTTTAAATGTAAAATTTGTGCGAAATGTTTCAAACATTCCAGTACCTTAAAAACTCATATTAGAACTCACACTGACGAGAAACCTTTTAAATGTAAATATGTTCGAAATTTTTCACACAATCCGGTAGTTTAA
- Protein Sequence
- MDDSSINSVTIKSENDISSQTNHEINIEIDIKKEELHSVCDLPDFKMEFPDFDGELNLERSIKRYSRKQDPNYKKRFLSAATKWQPHFGKFYGTCSSCGKFFYDKLLFLNHYYIYHFFVNSKKSVNLKRNNSGIKHINRKNDLSNVNKHIRADSFTQQSDLKKYCEKRFKCKICSKCFTQSYNLKSHIRTHTDEKPFKCKLCSKCFTVSSGLKRHIRIHTGEKPFKCKLCSKCFTQSCHLKSHIRTHTDEKPFKCKLCSKCFTKSSNLKTHIRTHTDEKPFKCEICSKCFTQSSNLKTHIRTHTDEKPFKCKICSKCFTRSESSNLNRHIRIHTDEKRFKCKICSKCFIDSSGLKGHIRIHTGEKPFKCKLCSKCFTQLSDLKTHIRTHTGEKPFKCKICSKCFTHSCNLKSHIRTHTDEKHFKCKICAKCFKHSSTLKTHIRTHTDEKPFKCKYVRNFSHNPVV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00057461;
- 90% Identity
- iTF_00056934;
- 80% Identity
- iTF_00056934;