Avir007894.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00002847:42078-44452[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.088 6.9 6.9 0.2 22 48 125 151 119 155 0.83 2 10 0.0066 0.52 10.5 0.4 21 46 152 177 149 182 0.91 3 10 0.0023 0.18 11.9 0.7 21 45 208 232 200 242 0.85 4 10 4.7 3.7e+02 1.3 0.3 22 44 237 259 232 263 0.85 5 10 0.00039 0.031 14.4 1.5 5 46 248 289 245 296 0.78 6 10 8.7 6.9e+02 0.5 0.1 23 51 294 322 288 325 0.81 7 10 0.0043 0.34 11.1 0.4 21 45 348 372 339 383 0.83 8 10 4 3.1e+02 1.6 0.1 22 46 377 401 372 408 0.81 9 10 0.019 1.5 9.0 0.1 20 51 403 434 385 437 0.80 10 10 9.9 7.8e+02 0.3 0.0 21 44 432 455 430 459 0.88
Sequence Information
- Coding Sequence
- ATGGAATTTCCAGATTTTGATGAAGAATTAAATTTAGAGCGAAGCATCAAAAAATATTCGAGGAAACAGGATCTAAGTTGTAAAAAACGTTTCCTATCTGCGGCAACAAAATGCCAACCTCACTTTGGAAAATTCTATGGAACATGTTCATCTTGTGGAAAATTTTTCTATGATAAATTGTTATTTTTAAGCCATTATTATATTTACCACTTTTTCGTTAATTCGAAAAAATCTGTTAACTTAAAAAGGAATAATTCTGGCATAAAACATATTAACCGACAAAAAAATCTTAGTAATGTAAACAAACAGATAAGGGCGGACAGTTTCACACAACAGAGTGATTTAAAAAAATATATTAAAACCCACAATGGCGAAAAACGTTTTAAATGTAAGATTTGTTCAAAATGTTTCACACAATCCGGTCATTTAAATAGACATATTAGAATTCACACTGGCGAGAAACCTTTTAAATGTAAAATATGTTTGAAATGTTTCACAGAATCCTGTAATTTAAATAGACATATTAGAATTCACACAGACGAGAAACGTTTTAAATGTAAAATATGTTCGAAATGTTTCATAGATTCCAGTGGATTAAAAAGTCATATTAGAATTCACACTGGTGAGAAACCTTTTAAATGTAAAATTTGTTCAAAATGTTTTAAACAATCCTGTAATTTAAAAAGTCATATTAGAACTCATACTGACGAGAAACATTTTAAATGTAAAATTTGTGCGAAATGTTTCAAACATTCCAGTACCTTAAAAAGTCATATTAGAACTCACACTGACGAGAAACCTTTTAAATGTAAAATATGTTTGAAATATTTCACACAATCCTGTAATTTAAATAGACATATTAGAATTCACACAGACGAGAAACGTTTTAAATGTAAAATATGTTCGAAATGTTTCATAGATTCCAGTGGATTAAAAAGTCATATTAGAATTCACACTGGTGAGAAACCTTTTAAATGTAAATTATGTTTGAAATGTTTCACACATCTCAGTGACTTAAAAACTCATATTAGAACTCACACTGGCGAAAAGCCTTTTAAATGTAAAATTTGTTCAAAATGTTTCACACAATCCTGTAATTTAAAAAGTCATATTAGAACTCATACTGACGAGAAACATTTTAAATGTAAAATTTGTGCGAAATGCTTCAAACATTCTATTAGTTTAAAAACTCATATTAGAACTCACACTGACGAGAAACCTTTTAAATGTAAAATATGTTCGAAATTTTTCACACAATCCGGTAGTTTAAAATCTCATATTAGAATTCACACTGGTGAGAAACCTTTTAAATGTAAATTATGTTCGAAATGTTTCACACACTCCGGTAGTTTAAAAGTTCATATTAGAAGTCACACTAACGAAAACCCTTTTAAATGTTAA
- Protein Sequence
- MEFPDFDEELNLERSIKKYSRKQDLSCKKRFLSAATKCQPHFGKFYGTCSSCGKFFYDKLLFLSHYYIYHFFVNSKKSVNLKRNNSGIKHINRQKNLSNVNKQIRADSFTQQSDLKKYIKTHNGEKRFKCKICSKCFTQSGHLNRHIRIHTGEKPFKCKICLKCFTESCNLNRHIRIHTDEKRFKCKICSKCFIDSSGLKSHIRIHTGEKPFKCKICSKCFKQSCNLKSHIRTHTDEKHFKCKICAKCFKHSSTLKSHIRTHTDEKPFKCKICLKYFTQSCNLNRHIRIHTDEKRFKCKICSKCFIDSSGLKSHIRIHTGEKPFKCKLCLKCFTHLSDLKTHIRTHTGEKPFKCKICSKCFTQSCNLKSHIRTHTDEKHFKCKICAKCFKHSISLKTHIRTHTDEKPFKCKICSKFFTQSGSLKSHIRIHTGEKPFKCKLCSKCFTHSGSLKVHIRSHTNENPFKC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00056870; iTF_00057543; iTF_00056934;
- 90% Identity
- iTF_00056870;
- 80% Identity
- iTF_00056870;