Avir014988.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00000730:119770-125420[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 8.5 6.7e+02 0.5 0.1 26 46 214 234 205 241 0.84 2 11 3 2.3e+02 2.0 0.1 26 48 242 264 237 268 0.84 3 11 0.011 0.88 9.7 0.1 21 46 265 290 262 297 0.86 4 11 0.51 41 4.4 0.1 21 52 293 324 289 326 0.85 5 11 0.34 27 5.0 0.0 21 44 349 372 341 376 0.89 6 11 0.002 0.16 12.1 0.1 21 46 377 402 372 408 0.86 7 11 0.21 17 5.6 0.2 21 52 405 436 401 438 0.77 8 11 8.7 6.9e+02 0.5 0.1 21 43 433 455 430 465 0.71 9 11 2.9 2.3e+02 2.0 0.1 21 44 489 512 479 515 0.86 10 11 0.0058 0.46 10.6 0.4 10 46 505 542 499 547 0.84 11 11 0.046 3.6 7.8 0.1 21 45 573 597 559 599 0.86
Sequence Information
- Coding Sequence
- ATGTTCAAAGATGCATCAAATGTATTAATAAACACTAAAATCGAAAGTAATTCTAAAGATTTGTTATCCAATATTAAAACCGAAGAAATTAATATTGCAGAATGTAAACTCGAATTCGAGAACTTACATCAATTCGATCTGTCTAAGATCAAAACGGAAAGTTGTGTAGAAAAAGTTTCTGAAACTAAAAGTGATGTGTTAAACAGCAGAGAAAATATAAAAACCGAAAATATTGATTCAAATGAGGGTATTCAAGAAGCAAAAAGTGATATCGAAATTAAGACAGAAATTACACAGCGTTCATTTGATTTCCCTATTTCTAGAAATGATATCCATGGTTTTGGTAAAAATCGACACACAGTACAAACAATCAGAATATATTGTAGGAAAAAACGTTTCCAATCTGTGGCAAAAAAATGGCAACCTCACTTTGGGAAATTCGATGGAACATGTTCTTCTTGTGGACGATTTTTCTGTGATAAATTGCTATTTTTAAACCATTTTTATATTTACCACTTTGTTGTTAATTGTAAAAAAACTGTTAACTTGAGGAGGAATAATTTTGCTACAAAACACATTAACCTAGAAGATCTTGGTAATTTACAACAGATGAGGACTTACAGAAGACAAAAATCCTTTAAATGTAAAATTTGTTTTAAATGTTTTACACGAAAAAAAGATTTAATACAGCATATTAGAATTCACACTGACGGGAAATCTTTTAAATGTAAAATTTGTTCAAAGTGTTTTACAGAATTCGAACATTTAAAAAGGCATATTGAAACTCACACTGACGAGAAACCTTTTAAATGTAAAATTTGTTCAAAGTGTTTTACACAATCCAGATATTTAAAAATTCATATTAGAACTCACACTGGTGAAAAACCTTTCAAATGTAACATTTGTTCGAAGCGTTTTACAGATCAAAGTATCCTAAAACGGCATATTCAAATCCACACTGGTGAGAAACCTTTCAGTTGTAAAATTTGTTCAAAATGTTTTATAGGACAAACTAGCTTAAAACTGCATATTAGAACTCACACCGGAGAGAAACCTTTTAAATGTAAAACTTGTTCAAAATGTTTCACACAATCCGGTAATTTAACAATGCACATTAGAACTCACACTGATGAAAAACCTTTTAAATGTAAGATTTGTTCAAAGTGTTTCACACAATCCAGATATTTAAAAAAACATATTAGAACTCACACTGGTGAAAAACCTTTCAAATGTAACATTTGTTCGAAGTGTTTTATAGATCAAAGTATCCTAAAACGGCATATTCAAATCCACACTGGTGAGAAACCTTTCAGTTGTAAAATTTGTTCAAAATGTTTTATAGGACAAACTAGCTTAAAACTGCATATCAGAACTCACACTGGAGAGAAACCTTTTAAATGTAAAACTTGTTCAAAATGTTTCACACATTCCAGTAGTTTAAAATTTCATATTAGAACTCACACTGACGAGAAACCTTTTAAATGTGAAATTTGTTCAAAATGTTTCATACAACCCGGTCATTTAAAAACGCATATTAGAACTCACACTGGTGAAAAACCTTTCAGATGTGAAATTTGTTCAAAATGTTTCACAGACAAACGTAACTTAAAACAGCATATTAGAATTCACACTGGTGAAAAGCAATTTAAATGTAAAAATTGTTCAAAATGTTTCACACGTTCCGGTAGTTTAAAAGTTCATATTAGAACTCACACTGACGAGAAACCTTTTAAATGTAAGATTTGTTCTAAATGTTTCACACAATGCGGTAATTTAACAAAGCACATTAAAACTCACTGCTGA
- Protein Sequence
- MFKDASNVLINTKIESNSKDLLSNIKTEEINIAECKLEFENLHQFDLSKIKTESCVEKVSETKSDVLNSRENIKTENIDSNEGIQEAKSDIEIKTEITQRSFDFPISRNDIHGFGKNRHTVQTIRIYCRKKRFQSVAKKWQPHFGKFDGTCSSCGRFFCDKLLFLNHFYIYHFVVNCKKTVNLRRNNFATKHINLEDLGNLQQMRTYRRQKSFKCKICFKCFTRKKDLIQHIRIHTDGKSFKCKICSKCFTEFEHLKRHIETHTDEKPFKCKICSKCFTQSRYLKIHIRTHTGEKPFKCNICSKRFTDQSILKRHIQIHTGEKPFSCKICSKCFIGQTSLKLHIRTHTGEKPFKCKTCSKCFTQSGNLTMHIRTHTDEKPFKCKICSKCFTQSRYLKKHIRTHTGEKPFKCNICSKCFIDQSILKRHIQIHTGEKPFSCKICSKCFIGQTSLKLHIRTHTGEKPFKCKTCSKCFTHSSSLKFHIRTHTDEKPFKCEICSKCFIQPGHLKTHIRTHTGEKPFRCEICSKCFTDKRNLKQHIRIHTGEKQFKCKNCSKCFTRSGSLKVHIRTHTDEKPFKCKICSKCFTQCGNLTKHIKTHC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00056838;
- 90% Identity
- iTF_00056838;
- 80% Identity
- iTF_00056838;