Avir014988.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Altica viridicyanea
Gene Symbol
-
Assembly
None
Location
GWHAMMQ00000730:119770-125420[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 0.36 11 6.6 3.1 2 23 150 172 150 172 0.90
2 15 9.9e-07 3.1e-05 24.2 5.1 1 23 213 235 213 235 0.99
3 15 2.5e-05 0.0008 19.7 6.9 1 23 241 263 241 263 0.99
4 15 8.5e-07 2.7e-05 24.4 5.9 1 23 269 291 269 291 0.99
5 15 3e-06 9.5e-05 22.6 1.5 1 23 297 319 297 319 0.98
6 15 8.4e-06 0.00026 21.2 3.3 1 23 325 347 325 347 0.98
7 15 5.4e-07 1.7e-05 25.0 5.3 1 23 353 375 353 375 0.99
8 15 6.2e-07 1.9e-05 24.8 7.2 1 23 381 403 381 403 0.99
9 15 1e-05 0.00032 21.0 2.5 1 23 409 431 409 431 0.98
10 15 8.4e-06 0.00026 21.2 3.3 1 23 437 459 437 459 0.98
11 15 0.00041 0.013 15.9 9.6 1 23 465 487 465 487 0.99
12 15 2.8e-07 8.8e-06 25.9 4.2 1 23 493 515 493 515 0.99
13 15 1.9e-07 6e-06 26.4 4.1 1 23 521 543 521 543 0.99
14 15 4.4e-07 1.4e-05 25.3 5.2 1 23 549 571 549 571 0.99
15 15 1.8e-06 5.7e-05 23.3 7.9 1 23 577 599 577 599 0.99

Sequence Information

Coding Sequence
ATGTTCAAAGATGCATCAAATGTATTAATAAACACTAAAATCGAAAGTAATTCTAAAGATTTGTTATCCAATATTAAAACCGAAGAAATTAATATTGCAGAATGTAAACTCGAATTCGAGAACTTACATCAATTCGATCTGTCTAAGATCAAAACGGAAAGTTGTGTAGAAAAAGTTTCTGAAACTAAAAGTGATGTGTTAAACAGCAGAGAAAATATAAAAACCGAAAATATTGATTCAAATGAGGGTATTCAAGAAGCAAAAAGTGATATCGAAATTAAGACAGAAATTACACAGCGTTCATTTGATTTCCCTATTTCTAGAAATGATATCCATGGTTTTGGTAAAAATCGACACACAGTACAAACAATCAGAATATATTGTAGGAAAAAACGTTTCCAATCTGTGGCAAAAAAATGGCAACCTCACTTTGGGAAATTCGATGGAACATGTTCTTCTTGTGGACGATTTTTCTGTGATAAATTGCTATTTTTAAACCATTTTTATATTTACCACTTTGTTGTTAATTGTAAAAAAACTGTTAACTTGAGGAGGAATAATTTTGCTACAAAACACATTAACCTAGAAGATCTTGGTAATTTACAACAGATGAGGACTTACAGAAGACAAAAATCCTTTAAATGTAAAATTTGTTTTAAATGTTTTACACGAAAAAAAGATTTAATACAGCATATTAGAATTCACACTGACGGGAAATCTTTTAAATGTAAAATTTGTTCAAAGTGTTTTACAGAATTCGAACATTTAAAAAGGCATATTGAAACTCACACTGACGAGAAACCTTTTAAATGTAAAATTTGTTCAAAGTGTTTTACACAATCCAGATATTTAAAAATTCATATTAGAACTCACACTGGTGAAAAACCTTTCAAATGTAACATTTGTTCGAAGCGTTTTACAGATCAAAGTATCCTAAAACGGCATATTCAAATCCACACTGGTGAGAAACCTTTCAGTTGTAAAATTTGTTCAAAATGTTTTATAGGACAAACTAGCTTAAAACTGCATATTAGAACTCACACCGGAGAGAAACCTTTTAAATGTAAAACTTGTTCAAAATGTTTCACACAATCCGGTAATTTAACAATGCACATTAGAACTCACACTGATGAAAAACCTTTTAAATGTAAGATTTGTTCAAAGTGTTTCACACAATCCAGATATTTAAAAAAACATATTAGAACTCACACTGGTGAAAAACCTTTCAAATGTAACATTTGTTCGAAGTGTTTTATAGATCAAAGTATCCTAAAACGGCATATTCAAATCCACACTGGTGAGAAACCTTTCAGTTGTAAAATTTGTTCAAAATGTTTTATAGGACAAACTAGCTTAAAACTGCATATCAGAACTCACACTGGAGAGAAACCTTTTAAATGTAAAACTTGTTCAAAATGTTTCACACATTCCAGTAGTTTAAAATTTCATATTAGAACTCACACTGACGAGAAACCTTTTAAATGTGAAATTTGTTCAAAATGTTTCATACAACCCGGTCATTTAAAAACGCATATTAGAACTCACACTGGTGAAAAACCTTTCAGATGTGAAATTTGTTCAAAATGTTTCACAGACAAACGTAACTTAAAACAGCATATTAGAATTCACACTGGTGAAAAGCAATTTAAATGTAAAAATTGTTCAAAATGTTTCACACGTTCCGGTAGTTTAAAAGTTCATATTAGAACTCACACTGACGAGAAACCTTTTAAATGTAAGATTTGTTCTAAATGTTTCACACAATGCGGTAATTTAACAAAGCACATTAAAACTCACTGCTGA
Protein Sequence
MFKDASNVLINTKIESNSKDLLSNIKTEEINIAECKLEFENLHQFDLSKIKTESCVEKVSETKSDVLNSRENIKTENIDSNEGIQEAKSDIEIKTEITQRSFDFPISRNDIHGFGKNRHTVQTIRIYCRKKRFQSVAKKWQPHFGKFDGTCSSCGRFFCDKLLFLNHFYIYHFVVNCKKTVNLRRNNFATKHINLEDLGNLQQMRTYRRQKSFKCKICFKCFTRKKDLIQHIRIHTDGKSFKCKICSKCFTEFEHLKRHIETHTDEKPFKCKICSKCFTQSRYLKIHIRTHTGEKPFKCNICSKRFTDQSILKRHIQIHTGEKPFSCKICSKCFIGQTSLKLHIRTHTGEKPFKCKTCSKCFTQSGNLTMHIRTHTDEKPFKCKICSKCFTQSRYLKKHIRTHTGEKPFKCNICSKCFIDQSILKRHIQIHTGEKPFSCKICSKCFIGQTSLKLHIRTHTGEKPFKCKTCSKCFTHSSSLKFHIRTHTDEKPFKCEICSKCFIQPGHLKTHIRTHTGEKPFRCEICSKCFTDKRNLKQHIRIHTGEKQFKCKNCSKCFTRSGSLKVHIRTHTDEKPFKCKICSKCFTQCGNLTKHIKTHC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00057533;
90% Identity
iTF_00057533;
80% Identity
iTF_00057533;