Avir012443.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00000542:793130-803817[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.08 6.4 7.0 0.1 22 51 198 226 189 227 0.81 2 10 0.11 8.5 6.6 0.5 21 48 224 251 222 254 0.88 3 10 0.023 1.8 8.7 0.3 22 46 254 278 249 283 0.85 4 10 1.2 93 3.3 0.1 21 44 361 384 356 387 0.88 5 10 0.11 8.4 6.6 0.1 18 45 385 413 378 421 0.81 6 10 6.3 5e+02 0.9 0.3 22 47 418 443 412 449 0.85 7 10 0.005 0.4 10.8 0.1 22 48 479 505 472 509 0.85 8 10 0.045 3.6 7.8 0.1 21 48 506 533 504 537 0.87 9 10 0.034 2.7 8.2 0.0 21 49 534 562 531 565 0.87 10 10 0.32 26 5.0 0.2 21 45 562 586 559 592 0.89
Sequence Information
- Coding Sequence
- ATGAAAAGGGAAAGTGCTGTCGAAAAAGTTTCTCCAACTAAAAGCGATGTTGTGTTAATAAGCAAAAAAAATATAAAAACTGAAAATGTTGATTTAAATAAGGATATTGAAGAAAGGAAATGTGATATCGAAATTAAAACAGAACCTGCATTTGATTTCCATGCAAATGTTATCCATGATTTTGTTGAAAATCAACAAATAGGGCGAACAGTTAAAATGTATTCTAGGAATAAAAGTTTCCTATCTGCGGCAAAAAAATGGCATCATCATTTTGGGAAATTCAATGGAACATGTTTGTATTGTGGACAATTTTTTTGTGATAAATTGTTATTTTTATATCATTTTAGTATTTACCACTTTATAGTTAAATCTAAAAATTCTGTTGATTTAAGAATGAATAATTCTGCTACTAAACATATTGGACAAATATCCTTTAAATGCGAAATTTGTTCAAAATACTTCAAAGATCAAAGTTTATTAAATCAGCATATTATACTTCACACTTGTGAAAAATTATTCAAATGTGAATATTGTTCGAAATGTTTTACAAAATCCAAACATTTAAAAATGCATGTTAGAACTCACACTAACGAGAAACATTTTAAATGTGATATTTGTTCAAAATGTTTCCGAAGATCTGATGATTTGAAAAAGCATATTTTGATTCACACTGAAAAACCGTTTAGATGTGAAATTTGTTCAAAATGTTATATACAAAAAAGTAACTTAAAACAGCATATTATTAGAAATCACACTGGTGAAAAGTCATTGAAATGTGAAATTTGTTTTAAATGCTTCCGACAACAAAGTGATTTAAAACAACATATTAAAACTCATCCTTTTAAATGTATAATTTGTTCGAAATGTTTTCAAAATTTGAGTGATTTAGAAACGCATTATAGAATTCATAGTGATGAGAAACTTTTTAAATGTAAAATTTGTTCTAAATGTTTTAAAAACCAAAGTTATTTAAAAGAGCATAATAGACTTCACACTAGCGAAAAATTATTCAAATGTAAAGTTTGTTCCAAGTGTTTCACAAATTCTAGTAGTCTTAAAATCCATTTTAGAATTCACAGTAACGAAAGACCTTTTAAATGTGAAATTTGTTCAAAATGTTTCAAAACATCTGGTCAATTAAAAATTCATATTAGAAGTCACACTGGAGAAAGACCATTTAAATGTGAAATTTGTGAAAAATGTTTCATAAAATCTTATCATTTAAAAAGGCATACTAGAACTCACACTGGCGATAAACCTTTTAGATGTGAATATTGTTCAAAGTGTTTCACAGAAAATAGAAGATTAAAAAATCATCTTATTAGAGATCACACTGGTGAAAAGTCATTCAAATGTGAAGTTTGTCTAAAATGTTTCACACTACAAAATGATTTAAAACTACATATTAGAACTCACACTGCAGATAAAACTGAAAAGAAACCTTTTAAATGTGAAATCTGTTCAAAATGTTTTAAAGCATCCGGTAATTTAAAAAGGCATATTAGAATTCACACTGGTGAGAAACCTTTCAAATGTGAAATTTGTTCAGAATGTTTCACAACATCTAGCCATTTAAAGAGGCATATTAGAATTCACACTGGTGAGAAACCTTTTATATGTAAAATTTGTTCAAAATGTTTCGTACAATCCGGTGATTTAAATAAGCATATTAAAATTCACACGGGTGAAAAACCTTTTAAATGTGAAATTTGTTCAAAATGTTTCACACAATCTAGTCATTTATATACGCATGTTAGAATTCATATTGGCGAGAAACTTATTAAAAGTGAAATTTGTTCAAAATCTTTCTCAGAAAAGAAGAACTTAAAACAGCATATTATTAGAACTCACACTGACGAGAAAGCATTTTAA
- Protein Sequence
- MKRESAVEKVSPTKSDVVLISKKNIKTENVDLNKDIEERKCDIEIKTEPAFDFHANVIHDFVENQQIGRTVKMYSRNKSFLSAAKKWHHHFGKFNGTCLYCGQFFCDKLLFLYHFSIYHFIVKSKNSVDLRMNNSATKHIGQISFKCEICSKYFKDQSLLNQHIILHTCEKLFKCEYCSKCFTKSKHLKMHVRTHTNEKHFKCDICSKCFRRSDDLKKHILIHTEKPFRCEICSKCYIQKSNLKQHIIRNHTGEKSLKCEICFKCFRQQSDLKQHIKTHPFKCIICSKCFQNLSDLETHYRIHSDEKLFKCKICSKCFKNQSYLKEHNRLHTSEKLFKCKVCSKCFTNSSSLKIHFRIHSNERPFKCEICSKCFKTSGQLKIHIRSHTGERPFKCEICEKCFIKSYHLKRHTRTHTGDKPFRCEYCSKCFTENRRLKNHLIRDHTGEKSFKCEVCLKCFTLQNDLKLHIRTHTADKTEKKPFKCEICSKCFKASGNLKRHIRIHTGEKPFKCEICSECFTTSSHLKRHIRIHTGEKPFICKICSKCFVQSGDLNKHIKIHTGEKPFKCEICSKCFTQSSHLYTHVRIHIGEKLIKSEICSKSFSEKKNLKQHIIRTHTDEKAF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00056807;
- 90% Identity
- iTF_00056807;
- 80% Identity
- iTF_00056807;