Avir012443.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Altica viridicyanea
Gene Symbol
-
Assembly
None
Location
GWHAMMQ00000542:793130-803817[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 0.36 11 6.6 2.4 2 23 97 119 97 119 0.90
2 18 3e-06 9.4e-05 22.6 0.8 1 23 145 167 145 167 0.97
3 18 2.5e-05 0.00078 19.8 9.0 1 23 173 195 173 195 0.99
4 18 2.1e-07 6.7e-06 26.3 3.2 1 23 201 223 201 223 0.98
5 18 3.1e-06 9.6e-05 22.6 3.1 1 23 228 251 228 251 0.97
6 18 8.9e-07 2.8e-05 24.3 4.3 2 23 258 279 257 279 0.97
7 18 0.00051 0.016 15.6 2.8 1 23 281 303 281 303 0.97
8 18 1.6e-05 0.0005 20.4 6.3 1 23 309 331 309 331 0.98
9 18 3.8e-06 0.00012 22.3 5.3 1 23 337 359 337 359 0.98
10 18 2.6e-07 8.1e-06 26.0 3.4 1 23 365 387 365 387 0.99
11 18 4.3e-06 0.00013 22.2 7.7 1 23 393 415 393 415 0.99
12 18 0.0005 0.015 15.7 4.6 1 23 421 444 421 444 0.97
13 18 2.3e-05 0.00072 19.9 3.2 1 23 450 472 450 472 0.99
14 18 3.8e-07 1.2e-05 25.5 2.7 1 23 482 504 482 504 0.99
15 18 2e-07 6.3e-06 26.3 5.4 1 23 510 532 510 532 0.99
16 18 8.1e-07 2.5e-05 24.4 1.8 1 23 538 560 538 560 0.98
17 18 3.5e-06 0.00011 22.4 6.0 1 23 566 588 566 588 0.99
18 18 0.0004 0.012 16.0 0.4 5 23 598 617 597 617 0.95

Sequence Information

Coding Sequence
ATGAAAAGGGAAAGTGCTGTCGAAAAAGTTTCTCCAACTAAAAGCGATGTTGTGTTAATAAGCAAAAAAAATATAAAAACTGAAAATGTTGATTTAAATAAGGATATTGAAGAAAGGAAATGTGATATCGAAATTAAAACAGAACCTGCATTTGATTTCCATGCAAATGTTATCCATGATTTTGTTGAAAATCAACAAATAGGGCGAACAGTTAAAATGTATTCTAGGAATAAAAGTTTCCTATCTGCGGCAAAAAAATGGCATCATCATTTTGGGAAATTCAATGGAACATGTTTGTATTGTGGACAATTTTTTTGTGATAAATTGTTATTTTTATATCATTTTAGTATTTACCACTTTATAGTTAAATCTAAAAATTCTGTTGATTTAAGAATGAATAATTCTGCTACTAAACATATTGGACAAATATCCTTTAAATGCGAAATTTGTTCAAAATACTTCAAAGATCAAAGTTTATTAAATCAGCATATTATACTTCACACTTGTGAAAAATTATTCAAATGTGAATATTGTTCGAAATGTTTTACAAAATCCAAACATTTAAAAATGCATGTTAGAACTCACACTAACGAGAAACATTTTAAATGTGATATTTGTTCAAAATGTTTCCGAAGATCTGATGATTTGAAAAAGCATATTTTGATTCACACTGAAAAACCGTTTAGATGTGAAATTTGTTCAAAATGTTATATACAAAAAAGTAACTTAAAACAGCATATTATTAGAAATCACACTGGTGAAAAGTCATTGAAATGTGAAATTTGTTTTAAATGCTTCCGACAACAAAGTGATTTAAAACAACATATTAAAACTCATCCTTTTAAATGTATAATTTGTTCGAAATGTTTTCAAAATTTGAGTGATTTAGAAACGCATTATAGAATTCATAGTGATGAGAAACTTTTTAAATGTAAAATTTGTTCTAAATGTTTTAAAAACCAAAGTTATTTAAAAGAGCATAATAGACTTCACACTAGCGAAAAATTATTCAAATGTAAAGTTTGTTCCAAGTGTTTCACAAATTCTAGTAGTCTTAAAATCCATTTTAGAATTCACAGTAACGAAAGACCTTTTAAATGTGAAATTTGTTCAAAATGTTTCAAAACATCTGGTCAATTAAAAATTCATATTAGAAGTCACACTGGAGAAAGACCATTTAAATGTGAAATTTGTGAAAAATGTTTCATAAAATCTTATCATTTAAAAAGGCATACTAGAACTCACACTGGCGATAAACCTTTTAGATGTGAATATTGTTCAAAGTGTTTCACAGAAAATAGAAGATTAAAAAATCATCTTATTAGAGATCACACTGGTGAAAAGTCATTCAAATGTGAAGTTTGTCTAAAATGTTTCACACTACAAAATGATTTAAAACTACATATTAGAACTCACACTGCAGATAAAACTGAAAAGAAACCTTTTAAATGTGAAATCTGTTCAAAATGTTTTAAAGCATCCGGTAATTTAAAAAGGCATATTAGAATTCACACTGGTGAGAAACCTTTCAAATGTGAAATTTGTTCAGAATGTTTCACAACATCTAGCCATTTAAAGAGGCATATTAGAATTCACACTGGTGAGAAACCTTTTATATGTAAAATTTGTTCAAAATGTTTCGTACAATCCGGTGATTTAAATAAGCATATTAAAATTCACACGGGTGAAAAACCTTTTAAATGTGAAATTTGTTCAAAATGTTTCACACAATCTAGTCATTTATATACGCATGTTAGAATTCATATTGGCGAGAAACTTATTAAAAGTGAAATTTGTTCAAAATCTTTCTCAGAAAAGAAGAACTTAAAACAGCATATTATTAGAACTCACACTGACGAGAAAGCATTTTAA
Protein Sequence
MKRESAVEKVSPTKSDVVLISKKNIKTENVDLNKDIEERKCDIEIKTEPAFDFHANVIHDFVENQQIGRTVKMYSRNKSFLSAAKKWHHHFGKFNGTCLYCGQFFCDKLLFLYHFSIYHFIVKSKNSVDLRMNNSATKHIGQISFKCEICSKYFKDQSLLNQHIILHTCEKLFKCEYCSKCFTKSKHLKMHVRTHTNEKHFKCDICSKCFRRSDDLKKHILIHTEKPFRCEICSKCYIQKSNLKQHIIRNHTGEKSLKCEICFKCFRQQSDLKQHIKTHPFKCIICSKCFQNLSDLETHYRIHSDEKLFKCKICSKCFKNQSYLKEHNRLHTSEKLFKCKVCSKCFTNSSSLKIHFRIHSNERPFKCEICSKCFKTSGQLKIHIRSHTGERPFKCEICEKCFIKSYHLKRHTRTHTGDKPFRCEYCSKCFTENRRLKNHLIRDHTGEKSFKCEVCLKCFTLQNDLKLHIRTHTADKTEKKPFKCEICSKCFKASGNLKRHIRIHTGEKPFKCEICSECFTTSSHLKRHIRIHTGEKPFICKICSKCFVQSGDLNKHIKIHTGEKPFKCEICSKCFTQSSHLYTHVRIHIGEKLIKSEICSKSFSEKKNLKQHIIRTHTDEKAF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00057523;
90% Identity
iTF_00057523;
80% Identity
iTF_00057523;