Basic Information

Insect: Altica viridicyanea
Gene Symbol: -
Assembly: None
Location: GWHAMMQ00000035:1607532-1693232[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.043 3.4 7.9 0.0 21 44 214 237 209 241 0.92

2 11 8.5 6.7e+02 0.5 0.1 21 44 240 263 238 269 0.79

3 11 0.052 4.1 7.6 0.1 23 46 268 291 256 297 0.83

4 11 2.1 1.7e+02 2.4 0.0 21 46 294 319 290 327 0.85

5 11 0.016 1.2 9.3 0.0 21 46 341 366 332 373 0.86

6 11 0.021 1.7 8.8 0.5 21 52 386 417 381 419 0.90

7 11 4.6 3.6e+02 1.4 0.1 21 51 414 443 412 446 0.79

8 11 0.22 18 5.6 0.3 21 44 469 492 463 499 0.89

9 11 1.4 1.1e+02 3.0 0.7 25 46 501 522 493 528 0.82

10 11 0.22 17 5.6 0.0 21 48 525 552 521 556 0.85

11 11 0.18 14 5.9 0.0 21 44 553 576 551 580 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.043	3.4	7.9	0.0	21	44	214	237	209	241	0.92
2	11	8.5	6.7e+02	0.5	0.1	21	44	240	263	238	269	0.79
3	11	0.052	4.1	7.6	0.1	23	46	268	291	256	297	0.83
4	11	2.1	1.7e+02	2.4	0.0	21	46	294	319	290	327	0.85
5	11	0.016	1.2	9.3	0.0	21	46	341	366	332	373	0.86
6	11	0.021	1.7	8.8	0.5	21	52	386	417	381	419	0.90
7	11	4.6	3.6e+02	1.4	0.1	21	51	414	443	412	446	0.79
8	11	0.22	18	5.6	0.3	21	44	469	492	463	499	0.89
9	11	1.4	1.1e+02	3.0	0.7	25	46	501	522	493	528	0.82
10	11	0.22	17	5.6	0.0	21	48	525	552	521	556	0.85
11	11	0.18	14	5.9	0.0	21	44	553	576	551	580	0.90

Sequence Information

Coding Sequence: ATGTCAAACCCGGCATTAAACCACGTTTCTTTAACCAGAATATTGAAGCAAAACTACCTGAGAAAAATATACCTTCAACAGCGGCGAAAGTTATTATTCGTTCACCAAAACACAGAAAATATAAAAACTGAAAATTTTAATTCAAATGAGGGTATTCAAGAAAGAAAAAGCGATATCGAAATTAAGAAATTTGATTTTCCTGTTTGTACAAAAACTATCCATGATTTTGTTGAAAATCAACAAAGAGTGCAAACAATCAAAATGTATTCAAGGAAAAATGTAAGCATTTTCTTATATATTTCAGGTTTCCTTTCTGCGACAAAAAAATGGCATCATCATTTTGGGAAATTTAATGGAACATGTTTGTATTGTGGACAAATTTTTTGTGATAAATTGTTATTTTTTCATCATTTTATTATTAACCACTTTATAGTTAAATCTAAAAAATCTGTTGATTTGAGAATTAATAATTCTGCTACTAAACATATTGGACAAATATCATTTAAATGCGAAATTTACGCAGAAAGAATTTTACAAGCTGGGCACTTGATAAAATGTGTTGAAAATAATGACAATCCAAATACTGATGTTGTGAGTGATTTAAATAAGCATATTAAAATTCACACTGATGAAAAACCCTCGGAAAAACCTTTTAAATGTGAAATTTGTTCAGAATGTTTCACAAAATCCAGTGATTTAAAAAAGCATATTCACACATGTGAAAAACCTTACAAATGTGAAATTTGTTCAAAATCTTTCTCAGAAAAAACAACCTTAAAGTCACATATTAGAACTCACACTAAACCTTTTAAATGTAAAATTTGTTCCAAGTGTTTCACACAATCGAGTGATTTAAAAAAGCATATTAGAACTCACACTGGTGAAAAACCTTTTAAATGTAAATTTTGTCCGAAAGGTTTTCAAATTTCCAGTCATTTAAAAAGGCATATCAGAACTCATACTGGCGAGAAACCTTTTAAATGTGAAATTTGTTCAAAATTTCATATTAGAACTCACACTGGTGAGAAACCTTATAAATGTGAAATATGTTCGAAATGTTTCACACAATCCGGTGATTTAAAAAAGCATATTAGAACTCACACTGGCGAAAAACCTTTTAGATGTCATTTAAATATACATATTAGAACTCACACTGGTGAAAAACCATTTAGATGTGAAATTTGTTCAAAATGTTTCACACAATCCAGTAGCTTAAAAACTCATATTAGAATTCACACATGTGAAAAACCTTACAAATGTGAAATTTGTTCAAAATCTTTCTCAGAAAAAACAACCTTAAAGTCACATATTATTAGAACTCACACTAAACCTTTTAAATGTGAAATTTGTTCAAAATGTTTCATATATTCCAGTAGCTTACAAACTCATATTAGAACTCACACTGGTGAAAAACCTTTTAGATGTGAAATTTGTTCAAAATGTTTCACACAATCCAGTAGCTTAAATACTCATATTAGAACTCATACTGGTGAAAAACTTTACCAATGTACAATTTGTTCAAAATGTTTTCAAATTTCCAGTCATTTAAAAAGGCATATCAGAACTCATACTGGCGAGAAACCTTTTAAATGTGAAATTTGTTCAAAATGTTTCACTGATCAAAGTAATTTAAAAATGCATGTTAAAATTCACACTGGCGAGAAACCTTTTAAATGTGAAATTTGTTCAAAAAGTTTTATAAAATCCAGTAAATTAAAAAGGCATATTATAACTCACACTGGTTTAAAAATCATACAGATGTGA
Protein Sequence: MSNPALNHVSLTRILKQNYLRKIYLQQRRKLLFVHQNTENIKTENFNSNEGIQERKSDIEIKKFDFPVCTKTIHDFVENQQRVQTIKMYSRKNVSIFLYISGFLSATKKWHHHFGKFNGTCLYCGQIFCDKLLFFHHFIINHFIVKSKKSVDLRINNSATKHIGQISFKCEIYAERILQAGHLIKCVENNDNPNTDVVSDLNKHIKIHTDEKPSEKPFKCEICSECFTKSSDLKKHIHTCEKPYKCEICSKSFSEKTTLKSHIRTHTKPFKCKICSKCFTQSSDLKKHIRTHTGEKPFKCKFCPKGFQISSHLKRHIRTHTGEKPFKCEICSKFHIRTHTGEKPYKCEICSKCFTQSGDLKKHIRTHTGEKPFRCHLNIHIRTHTGEKPFRCEICSKCFTQSSSLKTHIRIHTCEKPYKCEICSKSFSEKTTLKSHIIRTHTKPFKCEICSKCFIYSSSLQTHIRTHTGEKPFRCEICSKCFTQSSSLNTHIRTHTGEKLYQCTICSKCFQISSHLKRHIRTHTGEKPFKCEICSKCFTDQSNLKMHVKIHTGEKPFKCEICSKSFIKSSKLKRHIITHTGLKIIQM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00056863;
90% Identity: iTF_00056863;
80% Identity: iTF_00056863;