Avir009335.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Altica viridicyanea
Gene Symbol
-
Assembly
None
Location
GWHAMMQ00000035:1607532-1693232[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 0.17 5.2 7.7 3.4 2 23 120 142 120 142 0.92
2 15 4.4 1.4e+02 3.2 0.1 14 23 199 208 197 208 0.93
3 15 2.2e-05 0.00068 19.9 3.7 1 22 218 239 218 239 0.95
4 15 2.8e-07 8.9e-06 25.9 2.2 1 23 244 266 244 266 0.99
5 15 3.9e-08 1.2e-06 28.6 5.8 1 23 270 292 270 292 0.99
6 15 7.5e-06 0.00023 21.4 4.2 1 23 298 320 298 320 0.99
7 15 3.6e-08 1.1e-06 28.7 3.7 1 23 345 367 345 367 0.99
8 15 2.7 84 3.9 0.4 14 23 375 384 372 384 0.89
9 15 1.5e-07 4.8e-06 26.7 3.8 1 23 390 412 390 412 0.99
10 15 4.3e-06 0.00013 22.2 1.5 1 23 418 441 418 441 0.97
11 15 3.9e-07 1.2e-05 25.4 3.8 1 23 445 467 445 467 0.99
12 15 1.1e-07 3.3e-06 27.2 4.2 1 23 473 495 473 495 0.99
13 15 5.2e-06 0.00016 21.9 6.6 1 23 501 523 501 523 0.99
14 15 3e-07 9.3e-06 25.8 3.3 1 23 529 551 529 551 0.98
15 15 3.2e-07 1e-05 25.7 1.7 1 23 557 579 557 579 0.99

Sequence Information

Coding Sequence
ATGTCAAACCCGGCATTAAACCACGTTTCTTTAACCAGAATATTGAAGCAAAACTACCTGAGAAAAATATACCTTCAACAGCGGCGAAAGTTATTATTCGTTCACCAAAACACAGAAAATATAAAAACTGAAAATTTTAATTCAAATGAGGGTATTCAAGAAAGAAAAAGCGATATCGAAATTAAGAAATTTGATTTTCCTGTTTGTACAAAAACTATCCATGATTTTGTTGAAAATCAACAAAGAGTGCAAACAATCAAAATGTATTCAAGGAAAAATGTAAGCATTTTCTTATATATTTCAGGTTTCCTTTCTGCGACAAAAAAATGGCATCATCATTTTGGGAAATTTAATGGAACATGTTTGTATTGTGGACAAATTTTTTGTGATAAATTGTTATTTTTTCATCATTTTATTATTAACCACTTTATAGTTAAATCTAAAAAATCTGTTGATTTGAGAATTAATAATTCTGCTACTAAACATATTGGACAAATATCATTTAAATGCGAAATTTACGCAGAAAGAATTTTACAAGCTGGGCACTTGATAAAATGTGTTGAAAATAATGACAATCCAAATACTGATGTTGTGAGTGATTTAAATAAGCATATTAAAATTCACACTGATGAAAAACCCTCGGAAAAACCTTTTAAATGTGAAATTTGTTCAGAATGTTTCACAAAATCCAGTGATTTAAAAAAGCATATTCACACATGTGAAAAACCTTACAAATGTGAAATTTGTTCAAAATCTTTCTCAGAAAAAACAACCTTAAAGTCACATATTAGAACTCACACTAAACCTTTTAAATGTAAAATTTGTTCCAAGTGTTTCACACAATCGAGTGATTTAAAAAAGCATATTAGAACTCACACTGGTGAAAAACCTTTTAAATGTAAATTTTGTCCGAAAGGTTTTCAAATTTCCAGTCATTTAAAAAGGCATATCAGAACTCATACTGGCGAGAAACCTTTTAAATGTGAAATTTGTTCAAAATTTCATATTAGAACTCACACTGGTGAGAAACCTTATAAATGTGAAATATGTTCGAAATGTTTCACACAATCCGGTGATTTAAAAAAGCATATTAGAACTCACACTGGCGAAAAACCTTTTAGATGTCATTTAAATATACATATTAGAACTCACACTGGTGAAAAACCATTTAGATGTGAAATTTGTTCAAAATGTTTCACACAATCCAGTAGCTTAAAAACTCATATTAGAATTCACACATGTGAAAAACCTTACAAATGTGAAATTTGTTCAAAATCTTTCTCAGAAAAAACAACCTTAAAGTCACATATTATTAGAACTCACACTAAACCTTTTAAATGTGAAATTTGTTCAAAATGTTTCATATATTCCAGTAGCTTACAAACTCATATTAGAACTCACACTGGTGAAAAACCTTTTAGATGTGAAATTTGTTCAAAATGTTTCACACAATCCAGTAGCTTAAATACTCATATTAGAACTCATACTGGTGAAAAACTTTACCAATGTACAATTTGTTCAAAATGTTTTCAAATTTCCAGTCATTTAAAAAGGCATATCAGAACTCATACTGGCGAGAAACCTTTTAAATGTGAAATTTGTTCAAAATGTTTCACTGATCAAAGTAATTTAAAAATGCATGTTAAAATTCACACTGGCGAGAAACCTTTTAAATGTGAAATTTGTTCAAAAAGTTTTATAAAATCCAGTAAATTAAAAAGGCATATTATAACTCACACTGGTTTAAAAATCATACAGATGTGA
Protein Sequence
MSNPALNHVSLTRILKQNYLRKIYLQQRRKLLFVHQNTENIKTENFNSNEGIQERKSDIEIKKFDFPVCTKTIHDFVENQQRVQTIKMYSRKNVSIFLYISGFLSATKKWHHHFGKFNGTCLYCGQIFCDKLLFFHHFIINHFIVKSKKSVDLRINNSATKHIGQISFKCEIYAERILQAGHLIKCVENNDNPNTDVVSDLNKHIKIHTDEKPSEKPFKCEICSECFTKSSDLKKHIHTCEKPYKCEICSKSFSEKTTLKSHIRTHTKPFKCKICSKCFTQSSDLKKHIRTHTGEKPFKCKFCPKGFQISSHLKRHIRTHTGEKPFKCEICSKFHIRTHTGEKPYKCEICSKCFTQSGDLKKHIRTHTGEKPFRCHLNIHIRTHTGEKPFRCEICSKCFTQSSSLKTHIRIHTCEKPYKCEICSKSFSEKTTLKSHIIRTHTKPFKCEICSKCFIYSSSLQTHIRTHTGEKPFRCEICSKCFTQSSSLNTHIRTHTGEKLYQCTICSKCFQISSHLKRHIRTHTGEKPFKCEICSKCFTDQSNLKMHVKIHTGEKPFKCEICSKSFIKSSKLKRHIITHTGLKIIQM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00057509;
90% Identity
iTF_00057509;
80% Identity
iTF_00057509;