Avir002342.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00000013:1783965-1787542[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.3 24 5.2 0.1 21 44 103 126 99 135 0.89 2 9 0.0057 0.45 10.7 0.6 22 52 161 191 152 193 0.92 3 9 4.9 3.8e+02 1.3 0.0 23 44 190 211 185 219 0.86 4 9 0.07 5.5 7.2 0.2 22 46 288 312 283 318 0.86 5 9 0.051 4 7.6 0.3 21 44 315 338 310 342 0.90 6 9 0.62 49 4.1 0.2 21 45 343 367 339 374 0.85 7 9 0.69 54 4.0 0.0 21 44 371 394 367 398 0.89 8 9 0.35 28 4.9 0.0 21 45 399 423 395 427 0.90 9 9 0.006 0.47 10.6 0.1 21 45 427 451 423 453 0.91
Sequence Information
- Coding Sequence
- ATGCAAACAATAAAAATGTATTCTTGGAAAAAACGTTTCCTATCCGCGACAAAAAAATGGCAACCTCAATTTGGAAAATACTATGGAACCTGTTCCTTTTGTGGACAATTTTTCTGTGATAAATTGCTATTTTTAAAGCATTTTTATATTTACCACTCTTTAGTTAATTGTAAAAAATCTGTTAACTTGAGAACTAGTAATTCTGCTGCAAAACATATTAACCTAGAAGATTTTGGTAATTTAAAAGAACAGATGAGGACTCACAGTGGACAAAAAGACTTAAAACAGCATAATGGAATTCACACTGGTGAAAAACCTTACAGATGTGAAATTTGTTCAAAATGTTTTACACAAAAAGGTGGCTTAAGAGAGCATATTATTAGAATTCACACTGGTGAAAAGTCATTCAAATGTAAAATATGTTCAAAATGTTTCGTAACATTCGGTCATTTAAAAAAGCATATTAAAACTCATACTCTCGAACAACCTTTTAAATGTAAAATTTGTTCAAAATGTTTCAAACAACAAAGCTATTTAAAACAACATATTAGAACTCACACTGGTGCAAAACCTTTCAGATGTGAAATTTGTTTAAAATGTTTCACACAAAAAGGTGGCTTAAAAGAGCATATTATTAGAATTCACACTGGTGAAAAGTCATTCAAATGTAAAATTTGTTCAAAATGTTTCGCAACATCCGGTCAATTAAAAAAGCATACTAAAACTCATACTGGCGAAAAACTTTTCAGATGTGAAGTTTGTTCAAAATATTTTCAACGACAATGGTATTTTAAACAGCATATTAAAGTTCACACAAACTGCTTTATAAAATCTCAAAATTTAGAAATGCATCACACTGGTGACAAACCTTTCAGATGTGAAATTTGTGTAAAATGTTTTAAACAATCATGTGAATTAAAAATTCATATTAAAACTCACACTGGTGAAAAACCTTTCAGATGTGAAATTTGTTCAAAATGTTTCAAACAGTCCTGTGAATTAAAAGTGCATATTAGAACTCACACTGGTGAAAAACCTTTTAAATGTAAAATTTGTGCGAAATGTTTTAAAATCTCCGCTCATTTAAAATGTCATATTAGAACACACACTGGTGAAAAACCGTTTAGATGTGAAATTTGTTCAAAATGTTTTCTAAGCTCCGGTGATTTAAAAAAGCATATTCGAACTCACACAGGTGAAAAACCTTTCCAATGTGAAATTTGTTCAAAATGTTTTAAAATTTCCGGTTCTTTAAAAATGCATCTTAGAACTCACACCGGTGAAAAACCTTTCAGATGTGAAATTTGTTCAAAATGTTTCACACAAAAGGGTAACTTAAAACGGCATATTAATAGAAGTTGTAACGGTTAA
- Protein Sequence
- MQTIKMYSWKKRFLSATKKWQPQFGKYYGTCSFCGQFFCDKLLFLKHFYIYHSLVNCKKSVNLRTSNSAAKHINLEDFGNLKEQMRTHSGQKDLKQHNGIHTGEKPYRCEICSKCFTQKGGLREHIIRIHTGEKSFKCKICSKCFVTFGHLKKHIKTHTLEQPFKCKICSKCFKQQSYLKQHIRTHTGAKPFRCEICLKCFTQKGGLKEHIIRIHTGEKSFKCKICSKCFATSGQLKKHTKTHTGEKLFRCEVCSKYFQRQWYFKQHIKVHTNCFIKSQNLEMHHTGDKPFRCEICVKCFKQSCELKIHIKTHTGEKPFRCEICSKCFKQSCELKVHIRTHTGEKPFKCKICAKCFKISAHLKCHIRTHTGEKPFRCEICSKCFLSSGDLKKHIRTHTGEKPFQCEICSKCFKISGSLKMHLRTHTGEKPFRCEICSKCFTQKGNLKRHINRSCNG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00056927;
- 90% Identity
- iTF_00056927;
- 80% Identity
- iTF_00056927;