Avir002342.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Altica viridicyanea
Gene Symbol
-
Assembly
None
Location
GWHAMMQ00000013:1783965-1787542[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 0.17 5.5 7.7 3.5 2 23 30 52 30 52 0.91
2 13 1.5e-06 4.6e-05 23.6 1.3 1 23 107 130 107 130 0.97
3 13 4.7e-06 0.00015 22.0 7.6 1 23 136 158 136 158 0.99
4 13 1.5e-07 4.7e-06 26.8 6.8 1 23 164 186 164 186 0.99
5 13 9.6e-06 0.0003 21.1 1.3 1 23 192 215 192 215 0.97
6 13 1e-06 3.2e-05 24.1 5.5 1 23 221 243 221 243 0.99
7 13 0.00015 0.0046 17.3 2.6 1 23 249 271 249 271 0.98
8 13 1.9e-05 0.00059 20.1 5.6 1 23 291 313 291 313 0.99
9 13 2.7e-06 8.4e-05 22.8 6.2 1 23 319 341 319 341 0.99
10 13 0.0066 0.21 12.1 8.3 1 23 347 369 347 369 0.99
11 13 8.4e-06 0.00026 21.2 3.1 1 23 375 397 375 397 0.99
12 13 5.3e-06 0.00017 21.9 3.1 1 23 403 425 403 425 0.99
13 13 5e-07 1.6e-05 25.1 2.8 1 21 431 451 431 452 0.95

Sequence Information

Coding Sequence
ATGCAAACAATAAAAATGTATTCTTGGAAAAAACGTTTCCTATCCGCGACAAAAAAATGGCAACCTCAATTTGGAAAATACTATGGAACCTGTTCCTTTTGTGGACAATTTTTCTGTGATAAATTGCTATTTTTAAAGCATTTTTATATTTACCACTCTTTAGTTAATTGTAAAAAATCTGTTAACTTGAGAACTAGTAATTCTGCTGCAAAACATATTAACCTAGAAGATTTTGGTAATTTAAAAGAACAGATGAGGACTCACAGTGGACAAAAAGACTTAAAACAGCATAATGGAATTCACACTGGTGAAAAACCTTACAGATGTGAAATTTGTTCAAAATGTTTTACACAAAAAGGTGGCTTAAGAGAGCATATTATTAGAATTCACACTGGTGAAAAGTCATTCAAATGTAAAATATGTTCAAAATGTTTCGTAACATTCGGTCATTTAAAAAAGCATATTAAAACTCATACTCTCGAACAACCTTTTAAATGTAAAATTTGTTCAAAATGTTTCAAACAACAAAGCTATTTAAAACAACATATTAGAACTCACACTGGTGCAAAACCTTTCAGATGTGAAATTTGTTTAAAATGTTTCACACAAAAAGGTGGCTTAAAAGAGCATATTATTAGAATTCACACTGGTGAAAAGTCATTCAAATGTAAAATTTGTTCAAAATGTTTCGCAACATCCGGTCAATTAAAAAAGCATACTAAAACTCATACTGGCGAAAAACTTTTCAGATGTGAAGTTTGTTCAAAATATTTTCAACGACAATGGTATTTTAAACAGCATATTAAAGTTCACACAAACTGCTTTATAAAATCTCAAAATTTAGAAATGCATCACACTGGTGACAAACCTTTCAGATGTGAAATTTGTGTAAAATGTTTTAAACAATCATGTGAATTAAAAATTCATATTAAAACTCACACTGGTGAAAAACCTTTCAGATGTGAAATTTGTTCAAAATGTTTCAAACAGTCCTGTGAATTAAAAGTGCATATTAGAACTCACACTGGTGAAAAACCTTTTAAATGTAAAATTTGTGCGAAATGTTTTAAAATCTCCGCTCATTTAAAATGTCATATTAGAACACACACTGGTGAAAAACCGTTTAGATGTGAAATTTGTTCAAAATGTTTTCTAAGCTCCGGTGATTTAAAAAAGCATATTCGAACTCACACAGGTGAAAAACCTTTCCAATGTGAAATTTGTTCAAAATGTTTTAAAATTTCCGGTTCTTTAAAAATGCATCTTAGAACTCACACCGGTGAAAAACCTTTCAGATGTGAAATTTGTTCAAAATGTTTCACACAAAAGGGTAACTTAAAACGGCATATTAATAGAAGTTGTAACGGTTAA
Protein Sequence
MQTIKMYSWKKRFLSATKKWQPQFGKYYGTCSFCGQFFCDKLLFLKHFYIYHSLVNCKKSVNLRTSNSAAKHINLEDFGNLKEQMRTHSGQKDLKQHNGIHTGEKPYRCEICSKCFTQKGGLREHIIRIHTGEKSFKCKICSKCFVTFGHLKKHIKTHTLEQPFKCKICSKCFKQQSYLKQHIRTHTGAKPFRCEICLKCFTQKGGLKEHIIRIHTGEKSFKCKICSKCFATSGQLKKHTKTHTGEKLFRCEVCSKYFQRQWYFKQHIKVHTNCFIKSQNLEMHHTGDKPFRCEICVKCFKQSCELKIHIKTHTGEKPFRCEICSKCFKQSCELKVHIRTHTGEKPFKCKICAKCFKISAHLKCHIRTHTGEKPFRCEICSKCFLSSGDLKKHIRTHTGEKPFQCEICSKCFKISGSLKMHLRTHTGEKPFRCEICSKCFTQKGNLKRHINRSCNG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00057508;
90% Identity
iTF_00057508;
80% Identity
iTF_00057508;