Avir016257.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00000851:414770-420289[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.28 22 5.2 0.1 27 46 196 215 191 222 0.88 2 10 0.032 2.5 8.3 0.0 21 45 246 270 234 277 0.87 3 10 0.81 64 3.8 0.2 21 44 274 297 269 303 0.86 4 10 0.068 5.4 7.2 0.1 22 45 304 327 298 334 0.84 5 10 0.1 8.2 6.6 0.1 21 45 331 355 327 362 0.86 6 10 2.7 2.2e+02 2.1 0.1 21 44 359 382 355 386 0.86 7 10 0.049 3.9 7.7 0.1 21 47 387 413 379 418 0.83 8 10 0.025 2 8.6 0.5 22 46 416 440 411 445 0.89 9 10 1.3 99 3.2 0.1 22 46 444 468 441 474 0.86 10 10 7 5.6e+02 0.8 0.0 22 44 472 494 468 497 0.85
Sequence Information
- Coding Sequence
- ATGGATAGTTTCAAAGAAGAATCAGATTCATTAATGAATAATAAAATCGAAAGTAATCCTAACGAATTATTATCTAATATTAAATCCGAAGAAATTGAAATTGGAGAATGTAATCTCGAATTCGAGAACTTGCATCAAATTGACTATTATATGATGAAAAGGGAAAGTTCTGAAGAAAAAGTTTCTCTAACTAAAAGTGATGTTTTAATAAGCACCGGAAATATAAAAACTGAAAATGGTAATTCATATGAGGGTATTCAAGAAAGAAAAAGTGATAACGAAATTAAAAAATATGATTTCCCTGTTTGTACAAAAGCTATCCATGATTTTGTTGAAGTAGGACAAACTGTGCAAACAATCAAAATGTATTCTAGGAAAAAATGTTTTCTGTCTGTGCCGAAAAAGTGGCAACCTCACTTTAGGAAATTTTATGGAACATGTTTCTCTTGTGGACAATTTTTTTGCGATAAATTGTTATTTTTAAACCATTTTTATATATACCACTTTTTACTTAATTCCAAAAAATCTGTTAAGTTAAGAAGGGATGTTTCTGATAAAAAACATATTGGACAAATGTTCTTTAAATGCGAAATTTGTACAAAATGTTTCACACAATCCAGTGATTTAAAAAAGCATATTAGAATTCACACTGACAAGAGACCTTTTAAATGTAAAATTTGTTCAAAATGTTTCATATCTTCCGGTAGTTTAAAAATTCATATTAGAATTCACACTGGTGAAAAACCTTTCAAATGTGAATTTTGTTCAAAATGTTTCACACAATCCAGTAACTTAAAAACTCATATTAGAACTCACACTGACGAGAAACCTTTCAAATGTGAAATTTGTTCAAAATGTTATGTAAAAAAAATTAACTTAAAACAGCATATTGTTAGAGGTCACAATGGTGAAAAGTCATTGAAATGTGAAATTTGTACAAAATGTTTCACACAATCCAGTAATTTAAAACTTCATATTAGAACTCACACTGGTGAAAAACCTTTTAAATGTAAAATTTGTTCAAAATGTTTCACATATTCCAGTAATTTAAAAGTTCATATTAGAACTCACACTGGTGAAAAACCTTTTAAATGTAAAATTTGCCCGAAAGGTTTTCTAAGTGCCAGTCATTTAAAAAGGCATATCAGAACTCACACTGGCGAGAAACCTTTTAAATGTAAAATTTGTTCAAGAAGTTTCACAGGACAAAGTAATTTAAAACGACATATGAGAACTCACAATCGAGACAAACCTTTTAAATGTAAAATTTGTTTAAAATGTTTCTCACAATCAAGTCATTTAAATAGGCATGTTAGAATTCATACTGGCGAGAAAGATTTTAAATGTGAAATTTGTTCAAAATGTTTCACACAAAACAGTTCTTTCAAAAGGCATATTAATGTTCACACTGGCGAGAAAGCTTTTAAATGTGAAATTTGTTCAAAATTTTTTACACGAGGCAGTACTTTAAAAAGGCATATTAGAACTCACACTGGTTAA
- Protein Sequence
- MDSFKEESDSLMNNKIESNPNELLSNIKSEEIEIGECNLEFENLHQIDYYMMKRESSEEKVSLTKSDVLISTGNIKTENGNSYEGIQERKSDNEIKKYDFPVCTKAIHDFVEVGQTVQTIKMYSRKKCFLSVPKKWQPHFRKFYGTCFSCGQFFCDKLLFLNHFYIYHFLLNSKKSVKLRRDVSDKKHIGQMFFKCEICTKCFTQSSDLKKHIRIHTDKRPFKCKICSKCFISSGSLKIHIRIHTGEKPFKCEFCSKCFTQSSNLKTHIRTHTDEKPFKCEICSKCYVKKINLKQHIVRGHNGEKSLKCEICTKCFTQSSNLKLHIRTHTGEKPFKCKICSKCFTYSSNLKVHIRTHTGEKPFKCKICPKGFLSASHLKRHIRTHTGEKPFKCKICSRSFTGQSNLKRHMRTHNRDKPFKCKICLKCFSQSSHLNRHVRIHTGEKDFKCEICSKCFTQNSSFKRHINVHTGEKAFKCEICSKFFTRGSTLKRHIRTHTG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00056858;
- 90% Identity
- iTF_00056858;
- 80% Identity
- iTF_00056858;