Avir016257.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Altica viridicyanea
Gene Symbol
-
Assembly
None
Location
GWHAMMQ00000851:414770-420289[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 1.7 52 4.6 3.1 2 23 146 168 146 168 0.89
2 12 3.4e-08 1.1e-06 28.8 4.0 1 23 194 216 194 216 0.99
3 12 4.5e-07 1.4e-05 25.2 2.4 1 23 222 244 222 244 0.99
4 12 2.1e-07 6.4e-06 26.3 6.2 1 23 250 272 250 272 0.99
5 12 4.2e-05 0.0013 19.0 2.2 1 23 278 301 278 301 0.96
6 12 9.2e-08 2.9e-06 27.4 3.8 2 23 308 329 307 329 0.97
7 12 6.4e-08 2e-06 27.9 5.4 1 23 335 357 335 357 0.99
8 12 9.4e-07 2.9e-05 24.2 2.4 1 23 363 385 363 385 0.99
9 12 9.2e-09 2.9e-07 30.6 3.2 1 23 391 413 391 413 0.99
10 12 1.1e-06 3.6e-05 24.0 6.5 1 23 419 441 419 441 0.99
11 12 4.6e-07 1.4e-05 25.2 4.7 1 23 447 469 447 469 0.98
12 12 2.8e-07 8.9e-06 25.9 2.7 1 23 475 497 475 497 0.99

Sequence Information

Coding Sequence
ATGGATAGTTTCAAAGAAGAATCAGATTCATTAATGAATAATAAAATCGAAAGTAATCCTAACGAATTATTATCTAATATTAAATCCGAAGAAATTGAAATTGGAGAATGTAATCTCGAATTCGAGAACTTGCATCAAATTGACTATTATATGATGAAAAGGGAAAGTTCTGAAGAAAAAGTTTCTCTAACTAAAAGTGATGTTTTAATAAGCACCGGAAATATAAAAACTGAAAATGGTAATTCATATGAGGGTATTCAAGAAAGAAAAAGTGATAACGAAATTAAAAAATATGATTTCCCTGTTTGTACAAAAGCTATCCATGATTTTGTTGAAGTAGGACAAACTGTGCAAACAATCAAAATGTATTCTAGGAAAAAATGTTTTCTGTCTGTGCCGAAAAAGTGGCAACCTCACTTTAGGAAATTTTATGGAACATGTTTCTCTTGTGGACAATTTTTTTGCGATAAATTGTTATTTTTAAACCATTTTTATATATACCACTTTTTACTTAATTCCAAAAAATCTGTTAAGTTAAGAAGGGATGTTTCTGATAAAAAACATATTGGACAAATGTTCTTTAAATGCGAAATTTGTACAAAATGTTTCACACAATCCAGTGATTTAAAAAAGCATATTAGAATTCACACTGACAAGAGACCTTTTAAATGTAAAATTTGTTCAAAATGTTTCATATCTTCCGGTAGTTTAAAAATTCATATTAGAATTCACACTGGTGAAAAACCTTTCAAATGTGAATTTTGTTCAAAATGTTTCACACAATCCAGTAACTTAAAAACTCATATTAGAACTCACACTGACGAGAAACCTTTCAAATGTGAAATTTGTTCAAAATGTTATGTAAAAAAAATTAACTTAAAACAGCATATTGTTAGAGGTCACAATGGTGAAAAGTCATTGAAATGTGAAATTTGTACAAAATGTTTCACACAATCCAGTAATTTAAAACTTCATATTAGAACTCACACTGGTGAAAAACCTTTTAAATGTAAAATTTGTTCAAAATGTTTCACATATTCCAGTAATTTAAAAGTTCATATTAGAACTCACACTGGTGAAAAACCTTTTAAATGTAAAATTTGCCCGAAAGGTTTTCTAAGTGCCAGTCATTTAAAAAGGCATATCAGAACTCACACTGGCGAGAAACCTTTTAAATGTAAAATTTGTTCAAGAAGTTTCACAGGACAAAGTAATTTAAAACGACATATGAGAACTCACAATCGAGACAAACCTTTTAAATGTAAAATTTGTTTAAAATGTTTCTCACAATCAAGTCATTTAAATAGGCATGTTAGAATTCATACTGGCGAGAAAGATTTTAAATGTGAAATTTGTTCAAAATGTTTCACACAAAACAGTTCTTTCAAAAGGCATATTAATGTTCACACTGGCGAGAAAGCTTTTAAATGTGAAATTTGTTCAAAATTTTTTACACGAGGCAGTACTTTAAAAAGGCATATTAGAACTCACACTGGTTAA
Protein Sequence
MDSFKEESDSLMNNKIESNPNELLSNIKSEEIEIGECNLEFENLHQIDYYMMKRESSEEKVSLTKSDVLISTGNIKTENGNSYEGIQERKSDNEIKKYDFPVCTKAIHDFVEVGQTVQTIKMYSRKKCFLSVPKKWQPHFRKFYGTCFSCGQFFCDKLLFLNHFYIYHFLLNSKKSVKLRRDVSDKKHIGQMFFKCEICTKCFTQSSDLKKHIRIHTDKRPFKCKICSKCFISSGSLKIHIRIHTGEKPFKCEFCSKCFTQSSNLKTHIRTHTDEKPFKCEICSKCYVKKINLKQHIVRGHNGEKSLKCEICTKCFTQSSNLKLHIRTHTGEKPFKCKICSKCFTYSSNLKVHIRTHTGEKPFKCKICPKGFLSASHLKRHIRTHTGEKPFKCKICSRSFTGQSNLKRHMRTHNRDKPFKCKICLKCFSQSSHLNRHVRIHTGEKDFKCEICSKCFTQNSSFKRHINVHTGEKAFKCEICSKFFTRGSTLKRHIRTHTG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00057507;
90% Identity
iTF_00057507;
80% Identity
iTF_00057507;