Basic Information

Insect: Altica viridicyanea
Gene Symbol: -
Assembly: None
Location: GWHAMMQ00001120:103393-109779[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.7 55 4.0 0.2 26 52 216 241 209 243 0.85

2 13 4.7 3.7e+02 1.3 0.0 22 44 240 262 238 266 0.88

3 13 0.076 6 7.1 0.2 21 46 267 292 259 298 0.85

4 13 1.2 95 3.2 0.1 21 45 295 319 290 328 0.85

5 13 0.096 7.6 6.7 0.0 21 52 352 383 338 384 0.89

6 13 0.94 74 3.6 0.0 21 47 380 406 376 412 0.86

7 13 9.2 7.3e+02 0.4 0.4 20 43 408 431 405 436 0.85

8 13 0.0075 0.59 10.3 0.3 21 46 437 462 431 468 0.87

9 13 0.21 17 5.6 0.1 21 44 465 488 460 492 0.89

10 13 0.28 22 5.3 0.0 21 44 493 516 489 520 0.90

11 13 0.12 9.6 6.4 0.0 21 44 521 544 517 548 0.90

12 13 0.68 54 4.0 0.1 21 45 549 573 545 581 0.89

13 13 0.79 62 3.8 0.1 21 46 605 630 592 637 0.75

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.7	55	4.0	0.2	26	52	216	241	209	243	0.85
2	13	4.7	3.7e+02	1.3	0.0	22	44	240	262	238	266	0.88
3	13	0.076	6	7.1	0.2	21	46	267	292	259	298	0.85
4	13	1.2	95	3.2	0.1	21	45	295	319	290	328	0.85
5	13	0.096	7.6	6.7	0.0	21	52	352	383	338	384	0.89
6	13	0.94	74	3.6	0.0	21	47	380	406	376	412	0.86
7	13	9.2	7.3e+02	0.4	0.4	20	43	408	431	405	436	0.85
8	13	0.0075	0.59	10.3	0.3	21	46	437	462	431	468	0.87
9	13	0.21	17	5.6	0.1	21	44	465	488	460	492	0.89
10	13	0.28	22	5.3	0.0	21	44	493	516	489	520	0.90
11	13	0.12	9.6	6.4	0.0	21	44	521	544	517	548	0.90
12	13	0.68	54	4.0	0.1	21	45	549	573	545	581	0.89
13	13	0.79	62	3.8	0.1	21	46	605	630	592	637	0.75

Sequence Information

Coding Sequence: ATGAATGTTTTCAAAGATGCATCAAATCCATTAATGCATAATAAAATTGGAAGTAATTCTAAAGGTTTGTTATCCAATATTAAAACCGAAGAAATTGATATTTTCAAAGAATCTAAACTCGAATTTGAGAACTTGCATAAATTCGATCTTTGTAAGATTAAAACGGAAAGTTGTGTAGGAAAAGTTTCTCCAACTAAAAGCGATATTGTGTTAATAGAAAATATAAAAAACGAAAATTTTGATTTAAATGAAGGTATTCAAGAAAGAATCGATATCGAAATTAAGGCAGACATTACACAGCGTCCATTTCATTTCCCTGTTTGTAGAAATGATATTCATGATTTGGGTAAAAATCGACAAACAGTGCGAACAGTCAAAATGTATTCTAGGAAAAAACGTTTCCTATCTGCGGCAAAAAAATGGCAACATCACTTTGGAAAATTCCATGGAATATGTTCCTCTTGTGGACGATTTTTTTGTGATAAATTGCTATTTTTAAACCATTTTTATATTTACCACTTTTTATTTAATTGTAAAAAATCTGTTAAGTTGAGAAAGAATAATTCTGTTGCAAAACACATTAACGTAGAAAATCTTGGTAAATTAAACGAACATATGGGGGCTCACAATAGGCAAAAATCTTTTAAATGCGAAATTTGTTTTAAATGTTACACCACTTCTTATTATCTTAAAATACATCTTCAAACTCACTTTGCTGAAAATTCTGTCAGTTGTGAAATTTGTTCAAAGCATTTTACACAAAAAGGTGATTTAAAAAAACATATTAGAACCCACACTGACGAGAAGCCTTTTAAATGTAAAATTTGTTCAAATTGTTTCACAATATCCTCTCATTTAAAAAGGCATATTAGAACTCACACTGGTGAAAAACCTTTCAGATGTGAAATTTGTTCAAACTGTTTCACACAAAAAGGTAGCTTAAAAGTGCATATTATTAGAACTCATGCTGATGAAAGGTCATTTAAATGTGAAATTTGTTCAAAATGTTTTCCACGATATACTGATTTAAAAGATCATATTAGAATTCATACTGACGAAAATCCTTTTAAATGTAAAATATGTTCAAAATACTTCGTAGCATCCGGTCAGTTGAAAAGACATATTAAAACTCACACTGTCGAAAAACCATTCAAATGTGAAATTTGTTCAAAATGTTTTAAACAAATAGGTGGTTTAAAAGAACATGTTATTAGAACTCACACTAGTGAAAAGTCATTCAAATGTGAAATCTGTTTAAAATGTTTTCCACGACAAAGGTATTTAAACCAGCATAATAGAATTCATACTAACGAGAAACCTTTTAAATGCAAAATTTGTTCAAAATGTTTTATACAATCCGAACATTTAAAAAGGCATATTAGAACTCACACTGGTGAAAAACCTTTCAGATGTGAAATTTGTTTAAAATGTTTCACACAATCCGGATACTTAAAAATGCATATTAGAACTCACACTGGGGAGACACCTTTTAAATGTAAAATTTGTTCAAAATGTTTCATACAATCCGGGGATTTAAAAGAGCATATTAAAAGTCACACTGGTGAAAAACCTTTTAAATGTACAATTTGCTCGAAATGTTTTAAAAGTTCAAGTTCTTTAAAAAAACATATTAGAACTCACACTGGTGAAAAACCTTTAAGATGTGAAATTTGTTCAAAATGTTTTACAAGTTCCGGTTCTTTAAAAAAGCATATTAGAACTCACACTGGTGAAAAAACTTTCATATGTGAAATTTGTTCAAAATCTTTTAAAAGCACCGGTTCTTTAAAAATGCATATTAGAACTCACACTGGTGAAAAACCTTTCAAATGTGATATTTGTTTGAAATGTTTCACACGACAAAGTGGCTTAAAACAGCATATTATTAGAACTCATACTAACGAAAAACCTATTCAATGTAGTTAA
Protein Sequence: MNVFKDASNPLMHNKIGSNSKGLLSNIKTEEIDIFKESKLEFENLHKFDLCKIKTESCVGKVSPTKSDIVLIENIKNENFDLNEGIQERIDIEIKADITQRPFHFPVCRNDIHDLGKNRQTVRTVKMYSRKKRFLSAAKKWQHHFGKFHGICSSCGRFFCDKLLFLNHFYIYHFLFNCKKSVKLRKNNSVAKHINVENLGKLNEHMGAHNRQKSFKCEICFKCYTTSYYLKIHLQTHFAENSVSCEICSKHFTQKGDLKKHIRTHTDEKPFKCKICSNCFTISSHLKRHIRTHTGEKPFRCEICSNCFTQKGSLKVHIIRTHADERSFKCEICSKCFPRYTDLKDHIRIHTDENPFKCKICSKYFVASGQLKRHIKTHTVEKPFKCEICSKCFKQIGGLKEHVIRTHTSEKSFKCEICLKCFPRQRYLNQHNRIHTNEKPFKCKICSKCFIQSEHLKRHIRTHTGEKPFRCEICLKCFTQSGYLKMHIRTHTGETPFKCKICSKCFIQSGDLKEHIKSHTGEKPFKCTICSKCFKSSSSLKKHIRTHTGEKPLRCEICSKCFTSSGSLKKHIRTHTGEKTFICEICSKSFKSTGSLKMHIRTHTGEKPFKCDICLKCFTRQSGLKQHIIRTHTNEKPIQCS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00056825;
90% Identity: iTF_00056825;
80% Identity: iTF_00056825;