Basic Information

Insect: Altica viridicyanea
Gene Symbol: -
Assembly: None
Location: GWHAMMQ00001120:103393-109779[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.4 13 6.5 2.4 3 23 152 173 151 173 0.90

2 16 2.1e-05 0.00065 20.0 5.3 1 23 215 237 215 237 0.99

3 16 5.6e-07 1.7e-05 24.9 2.5 2 23 244 265 243 265 0.97

4 16 2.7e-05 0.00084 19.7 7.2 1 23 271 293 271 293 0.99

5 16 4.5e-05 0.0014 18.9 2.3 1 23 299 322 299 322 0.97

6 16 1.7e-06 5.4e-05 23.4 2.5 1 23 328 350 328 350 0.99

7 16 5e-06 0.00016 21.9 1.6 1 23 356 378 356 378 0.99

8 16 0.0001 0.0032 17.8 1.6 1 23 384 407 384 407 0.96

9 16 8.4e-05 0.0026 18.1 3.7 1 23 413 435 413 435 0.98

10 16 4e-07 1.3e-05 25.4 7.0 1 23 441 463 441 463 0.99

11 16 2.6e-06 8.1e-05 22.8 3.5 1 23 469 491 469 491 0.99

12 16 1.5e-06 4.8e-05 23.6 2.9 1 23 497 519 497 519 0.99

13 16 1.1e-07 3.5e-06 27.1 6.3 1 23 525 547 525 547 0.99

14 16 3.6e-07 1.1e-05 25.5 3.4 2 23 554 575 553 575 0.97

15 16 9.6e-07 3e-05 24.2 1.0 1 23 581 603 581 603 0.98

16 16 4.1e-06 0.00013 22.2 3.1 1 23 609 632 609 632 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.4	13	6.5	2.4	3	23	152	173	151	173	0.90
2	16	2.1e-05	0.00065	20.0	5.3	1	23	215	237	215	237	0.99
3	16	5.6e-07	1.7e-05	24.9	2.5	2	23	244	265	243	265	0.97
4	16	2.7e-05	0.00084	19.7	7.2	1	23	271	293	271	293	0.99
5	16	4.5e-05	0.0014	18.9	2.3	1	23	299	322	299	322	0.97
6	16	1.7e-06	5.4e-05	23.4	2.5	1	23	328	350	328	350	0.99
7	16	5e-06	0.00016	21.9	1.6	1	23	356	378	356	378	0.99
8	16	0.0001	0.0032	17.8	1.6	1	23	384	407	384	407	0.96
9	16	8.4e-05	0.0026	18.1	3.7	1	23	413	435	413	435	0.98
10	16	4e-07	1.3e-05	25.4	7.0	1	23	441	463	441	463	0.99
11	16	2.6e-06	8.1e-05	22.8	3.5	1	23	469	491	469	491	0.99
12	16	1.5e-06	4.8e-05	23.6	2.9	1	23	497	519	497	519	0.99
13	16	1.1e-07	3.5e-06	27.1	6.3	1	23	525	547	525	547	0.99
14	16	3.6e-07	1.1e-05	25.5	3.4	2	23	554	575	553	575	0.97
15	16	9.6e-07	3e-05	24.2	1.0	1	23	581	603	581	603	0.98
16	16	4.1e-06	0.00013	22.2	3.1	1	23	609	632	609	632	0.97

Sequence Information

Coding Sequence: ATGAATGTTTTCAAAGATGCATCAAATCCATTAATGCATAATAAAATTGGAAGTAATTCTAAAGGTTTGTTATCCAATATTAAAACCGAAGAAATTGATATTTTCAAAGAATCTAAACTCGAATTTGAGAACTTGCATAAATTCGATCTTTGTAAGATTAAAACGGAAAGTTGTGTAGGAAAAGTTTCTCCAACTAAAAGCGATATTGTGTTAATAGAAAATATAAAAAACGAAAATTTTGATTTAAATGAAGGTATTCAAGAAAGAATCGATATCGAAATTAAGGCAGACATTACACAGCGTCCATTTCATTTCCCTGTTTGTAGAAATGATATTCATGATTTGGGTAAAAATCGACAAACAGTGCGAACAGTCAAAATGTATTCTAGGAAAAAACGTTTCCTATCTGCGGCAAAAAAATGGCAACATCACTTTGGAAAATTCCATGGAATATGTTCCTCTTGTGGACGATTTTTTTGTGATAAATTGCTATTTTTAAACCATTTTTATATTTACCACTTTTTATTTAATTGTAAAAAATCTGTTAAGTTGAGAAAGAATAATTCTGTTGCAAAACACATTAACGTAGAAAATCTTGGTAAATTAAACGAACATATGGGGGCTCACAATAGGCAAAAATCTTTTAAATGCGAAATTTGTTTTAAATGTTACACCACTTCTTATTATCTTAAAATACATCTTCAAACTCACTTTGCTGAAAATTCTGTCAGTTGTGAAATTTGTTCAAAGCATTTTACACAAAAAGGTGATTTAAAAAAACATATTAGAACCCACACTGACGAGAAGCCTTTTAAATGTAAAATTTGTTCAAATTGTTTCACAATATCCTCTCATTTAAAAAGGCATATTAGAACTCACACTGGTGAAAAACCTTTCAGATGTGAAATTTGTTCAAACTGTTTCACACAAAAAGGTAGCTTAAAAGTGCATATTATTAGAACTCATGCTGATGAAAGGTCATTTAAATGTGAAATTTGTTCAAAATGTTTTCCACGATATACTGATTTAAAAGATCATATTAGAATTCATACTGACGAAAATCCTTTTAAATGTAAAATATGTTCAAAATACTTCGTAGCATCCGGTCAGTTGAAAAGACATATTAAAACTCACACTGTCGAAAAACCATTCAAATGTGAAATTTGTTCAAAATGTTTTAAACAAATAGGTGGTTTAAAAGAACATGTTATTAGAACTCACACTAGTGAAAAGTCATTCAAATGTGAAATCTGTTTAAAATGTTTTCCACGACAAAGGTATTTAAACCAGCATAATAGAATTCATACTAACGAGAAACCTTTTAAATGCAAAATTTGTTCAAAATGTTTTATACAATCCGAACATTTAAAAAGGCATATTAGAACTCACACTGGTGAAAAACCTTTCAGATGTGAAATTTGTTTAAAATGTTTCACACAATCCGGATACTTAAAAATGCATATTAGAACTCACACTGGGGAGACACCTTTTAAATGTAAAATTTGTTCAAAATGTTTCATACAATCCGGGGATTTAAAAGAGCATATTAAAAGTCACACTGGTGAAAAACCTTTTAAATGTACAATTTGCTCGAAATGTTTTAAAAGTTCAAGTTCTTTAAAAAAACATATTAGAACTCACACTGGTGAAAAACCTTTAAGATGTGAAATTTGTTCAAAATGTTTTACAAGTTCCGGTTCTTTAAAAAAGCATATTAGAACTCACACTGGTGAAAAAACTTTCATATGTGAAATTTGTTCAAAATCTTTTAAAAGCACCGGTTCTTTAAAAATGCATATTAGAACTCACACTGGTGAAAAACCTTTCAAATGTGATATTTGTTTGAAATGTTTCACACGACAAAGTGGCTTAAAACAGCATATTATTAGAACTCATACTAACGAAAAACCTATTCAATGTAGTTAA
Protein Sequence: MNVFKDASNPLMHNKIGSNSKGLLSNIKTEEIDIFKESKLEFENLHKFDLCKIKTESCVGKVSPTKSDIVLIENIKNENFDLNEGIQERIDIEIKADITQRPFHFPVCRNDIHDLGKNRQTVRTVKMYSRKKRFLSAAKKWQHHFGKFHGICSSCGRFFCDKLLFLNHFYIYHFLFNCKKSVKLRKNNSVAKHINVENLGKLNEHMGAHNRQKSFKCEICFKCYTTSYYLKIHLQTHFAENSVSCEICSKHFTQKGDLKKHIRTHTDEKPFKCKICSNCFTISSHLKRHIRTHTGEKPFRCEICSNCFTQKGSLKVHIIRTHADERSFKCEICSKCFPRYTDLKDHIRIHTDENPFKCKICSKYFVASGQLKRHIKTHTVEKPFKCEICSKCFKQIGGLKEHVIRTHTSEKSFKCEICLKCFPRQRYLNQHNRIHTNEKPFKCKICSKCFIQSEHLKRHIRTHTGEKPFRCEICLKCFTQSGYLKMHIRTHTGETPFKCKICSKCFIQSGDLKEHIKSHTGEKPFKCTICSKCFKSSSSLKKHIRTHTGEKPLRCEICSKCFTSSGSLKKHIRTHTGEKTFICEICSKSFKSTGSLKMHIRTHTGEKPFKCDICLKCFTRQSGLKQHIIRTHTNEKPIQCS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00057496;
90% Identity: iTF_00057496;
80% Identity: iTF_00057496;