Avir007452.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00000263:570711-590237[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.06 4.7 7.4 0.1 21 46 423 448 413 470 0.88 2 7 0.019 1.5 9.0 0.1 21 44 479 502 472 506 0.89 3 7 0.43 34 4.6 0.3 21 44 507 530 503 537 0.87 4 7 0.021 1.7 8.8 0.1 21 46 535 560 531 567 0.86 5 7 0.1 8.2 6.6 0.2 21 45 591 615 582 622 0.84 6 7 0.25 20 5.4 0.1 21 43 619 641 615 646 0.89 7 7 0.0028 0.22 11.6 0.8 13 45 638 671 636 673 0.85
Sequence Information
- Coding Sequence
- ATGGATGTTTTCAAAGATGCCTCAAATCCATTAATGAATAATAAAATTGAAAGTAATTCTAAAGATTTGGTATCCAATATTAAAACTGAAGAAATTGATATTGAAGAATGTAAACTCGAATTTGATAACTTGAATGTATTCGATCTTTGTACGATCAAAACGGAAACTTGTGTAGAAAAAGAAGTTTCTCCAACTAAAACTGATGTTGTGTTAATAAGCAGAGAAACTACAAAAACGAAAAATGTTGATTCAAATGAGAGTATTCAAGAAAGAAAAAGTGATATGGAAAATAAGACAAACATTACACAGCGTCCATTTGATTTCTCTGTTAGTAGAAATGAAAATCATCAAAGACTGCAAACAATTAAAATGTATTCTTGGAAAAAACTTCAAGAACAGCCCTACAAAAGTAGTATGATTGAGCAAGAACCGAAATCCCTAACAATGGATAATTCTTCAATAAATTCTTTAACTCCTAAAAGTGAAATGTTAATAAGCAGTGAAAATGATATTTTAAGCCAAACTAATCTTGAATTTGACATCAAAAAAGAAGAATTACAGTCCATTTGCGATTTACCGGATTTTAAAATGGAATTTCAAGATGATTTTGATAAAGAATTACATTCAGAGCGAAGCATCAAAAGTTATTCCTGGTCAAAGAGTCCAAGTTGTAAGATGCTTCAAGAACAGCCATACAAAAATAGTATGTTTAAGAAAGAACTGAAATTCGAATACGAAAACTCACAACAATTCGTAAAAGTGGATAATTTTACTATGTTAAGCAGTGAAAATGATAGAAGTGAAATAGATATTTCAAGTCAAACTACTCTTGACATGAATCTTGAATTTGAGTGTAAAAAAGAACTATTGCACTCTATTTGCGATTTACCGGATTTTAAAATGGAATTTCAAGGTTTTGATAACGAATTACATTCAGAGCGACGCCTCAAAAGATATTCCAGGAAACAGGATCCAAGTTCTAAAAAACGTTTCCTATCTGCGGCAAAAAAATGTCAACCTCATTTTGGAAAATTCTATGGAACATGTTCATCTTGTGGAAAATTTTTCTATGATATATTGCTATTTTTAAACCATTTTTATATTTACCACTTTTTCGTTAATACGAAGAAATCTGTGAACTTAAAAAGGAATAATTCGGGCACAAAGCATATTAACCGACAAGATCGTAGTAATTTAAACAAACAGATAAGAGGGCAAAGTTTCACACACCAAAGTGATTTTAAAAAATATATCAAAACACAAACTGGCGAAAAACCTTTTAAATGTAAGATTTGTTCAAAATGTTTCACACATTCCACTAATTTAAAAATTCATATTAGAACTCACACTGGCGAAAAACCATTTAAATGTAAGTTTTGTTCAAAATGTTTCACAGATTCCAGTAGTTTAATAGTTCATAATAGAACTCACACTGATGAGAAACCTTTTAAATGTAAAATATGTTTGAAAGGTTTTAATAGATCCTGTAACTTAAATAGACATATTAGAACTCACACTGACGAGAGACCATTTAAATGTAAAATTTGTTCGAAATGTTTCAGAAACTCCAGTCACTTAAATATTCATTTTAGAACTCACACTAACGAGAAACCTTTTAAATGTAAAATTTGTTCAAAATGTTTCACACAATCCAGTAACTTTAAAACTCATATTAGAACTCACACTGGCGAAAAACCATTTAAATGTAAGTTTTGTTCAAAATGTTTCACAGATTCCAGCAGTTTAAAAGTTCATAATAGAACTCACACTGACGAGAAACCTTTTAAATGTAAAATATGTTCGAAATGTTTCAATAGTTCCAGTACCTTAAATAGACATATTAGAACTCACACTGACGAGAAACCTTTTAAATGTAAAATTTGTTCGAAAAGTTTCAAACAATCCTATACTTTAAAATGTCATAGTAGAACTCACACTGACGAGAGACCATTTAAATGCAAAATTTGTTCGAAATGTTTTACACAATCCTGTAATTTAAAAACTCATATTAAAACACACTGA
- Protein Sequence
- MDVFKDASNPLMNNKIESNSKDLVSNIKTEEIDIEECKLEFDNLNVFDLCTIKTETCVEKEVSPTKTDVVLISRETTKTKNVDSNESIQERKSDMENKTNITQRPFDFSVSRNENHQRLQTIKMYSWKKLQEQPYKSSMIEQEPKSLTMDNSSINSLTPKSEMLISSENDILSQTNLEFDIKKEELQSICDLPDFKMEFQDDFDKELHSERSIKSYSWSKSPSCKMLQEQPYKNSMFKKELKFEYENSQQFVKVDNFTMLSSENDRSEIDISSQTTLDMNLEFECKKELLHSICDLPDFKMEFQGFDNELHSERRLKRYSRKQDPSSKKRFLSAAKKCQPHFGKFYGTCSSCGKFFYDILLFLNHFYIYHFFVNTKKSVNLKRNNSGTKHINRQDRSNLNKQIRGQSFTHQSDFKKYIKTQTGEKPFKCKICSKCFTHSTNLKIHIRTHTGEKPFKCKFCSKCFTDSSSLIVHNRTHTDEKPFKCKICLKGFNRSCNLNRHIRTHTDERPFKCKICSKCFRNSSHLNIHFRTHTNEKPFKCKICSKCFTQSSNFKTHIRTHTGEKPFKCKFCSKCFTDSSSLKVHNRTHTDEKPFKCKICSKCFNSSSTLNRHIRTHTDEKPFKCKICSKSFKQSYTLKCHSRTHTDERPFKCKICSKCFTQSCNLKTHIKTH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00057005;
- 90% Identity
- iTF_00057005;
- 80% Identity
- iTF_00057005;