Avir007452.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Altica viridicyanea
Gene Symbol
-
Assembly
None
Location
GWHAMMQ00000263:570711-590237[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 10 0.76 24 5.7 0.6 2 23 348 370 348 370 0.84
2 10 7.7e-07 2.4e-05 24.5 7.5 1 23 427 449 427 449 0.99
3 10 1.2e-05 0.00037 20.8 5.2 1 23 455 477 455 477 0.99
4 10 2.5e-06 7.9e-05 22.9 4.7 1 23 483 505 483 505 0.99
5 10 4.7e-06 0.00015 22.0 8.4 1 23 511 533 511 533 0.99
6 10 2.8e-07 8.9e-06 25.9 7.0 1 23 539 561 539 561 0.99
7 10 1.3e-05 0.0004 20.7 6.5 1 23 567 589 567 589 0.99
8 10 1.7e-07 5.3e-06 26.6 5.6 1 23 595 617 595 617 0.99
9 10 0.0012 0.036 14.5 7.5 1 23 623 645 623 645 0.98
10 10 6.8e-06 0.00021 21.5 8.9 1 23 651 673 651 673 0.99

Sequence Information

Coding Sequence
ATGGATGTTTTCAAAGATGCCTCAAATCCATTAATGAATAATAAAATTGAAAGTAATTCTAAAGATTTGGTATCCAATATTAAAACTGAAGAAATTGATATTGAAGAATGTAAACTCGAATTTGATAACTTGAATGTATTCGATCTTTGTACGATCAAAACGGAAACTTGTGTAGAAAAAGAAGTTTCTCCAACTAAAACTGATGTTGTGTTAATAAGCAGAGAAACTACAAAAACGAAAAATGTTGATTCAAATGAGAGTATTCAAGAAAGAAAAAGTGATATGGAAAATAAGACAAACATTACACAGCGTCCATTTGATTTCTCTGTTAGTAGAAATGAAAATCATCAAAGACTGCAAACAATTAAAATGTATTCTTGGAAAAAACTTCAAGAACAGCCCTACAAAAGTAGTATGATTGAGCAAGAACCGAAATCCCTAACAATGGATAATTCTTCAATAAATTCTTTAACTCCTAAAAGTGAAATGTTAATAAGCAGTGAAAATGATATTTTAAGCCAAACTAATCTTGAATTTGACATCAAAAAAGAAGAATTACAGTCCATTTGCGATTTACCGGATTTTAAAATGGAATTTCAAGATGATTTTGATAAAGAATTACATTCAGAGCGAAGCATCAAAAGTTATTCCTGGTCAAAGAGTCCAAGTTGTAAGATGCTTCAAGAACAGCCATACAAAAATAGTATGTTTAAGAAAGAACTGAAATTCGAATACGAAAACTCACAACAATTCGTAAAAGTGGATAATTTTACTATGTTAAGCAGTGAAAATGATAGAAGTGAAATAGATATTTCAAGTCAAACTACTCTTGACATGAATCTTGAATTTGAGTGTAAAAAAGAACTATTGCACTCTATTTGCGATTTACCGGATTTTAAAATGGAATTTCAAGGTTTTGATAACGAATTACATTCAGAGCGACGCCTCAAAAGATATTCCAGGAAACAGGATCCAAGTTCTAAAAAACGTTTCCTATCTGCGGCAAAAAAATGTCAACCTCATTTTGGAAAATTCTATGGAACATGTTCATCTTGTGGAAAATTTTTCTATGATATATTGCTATTTTTAAACCATTTTTATATTTACCACTTTTTCGTTAATACGAAGAAATCTGTGAACTTAAAAAGGAATAATTCGGGCACAAAGCATATTAACCGACAAGATCGTAGTAATTTAAACAAACAGATAAGAGGGCAAAGTTTCACACACCAAAGTGATTTTAAAAAATATATCAAAACACAAACTGGCGAAAAACCTTTTAAATGTAAGATTTGTTCAAAATGTTTCACACATTCCACTAATTTAAAAATTCATATTAGAACTCACACTGGCGAAAAACCATTTAAATGTAAGTTTTGTTCAAAATGTTTCACAGATTCCAGTAGTTTAATAGTTCATAATAGAACTCACACTGATGAGAAACCTTTTAAATGTAAAATATGTTTGAAAGGTTTTAATAGATCCTGTAACTTAAATAGACATATTAGAACTCACACTGACGAGAGACCATTTAAATGTAAAATTTGTTCGAAATGTTTCAGAAACTCCAGTCACTTAAATATTCATTTTAGAACTCACACTAACGAGAAACCTTTTAAATGTAAAATTTGTTCAAAATGTTTCACACAATCCAGTAACTTTAAAACTCATATTAGAACTCACACTGGCGAAAAACCATTTAAATGTAAGTTTTGTTCAAAATGTTTCACAGATTCCAGCAGTTTAAAAGTTCATAATAGAACTCACACTGACGAGAAACCTTTTAAATGTAAAATATGTTCGAAATGTTTCAATAGTTCCAGTACCTTAAATAGACATATTAGAACTCACACTGACGAGAAACCTTTTAAATGTAAAATTTGTTCGAAAAGTTTCAAACAATCCTATACTTTAAAATGTCATAGTAGAACTCACACTGACGAGAGACCATTTAAATGCAAAATTTGTTCGAAATGTTTTACACAATCCTGTAATTTAAAAACTCATATTAAAACACACTGA
Protein Sequence
MDVFKDASNPLMNNKIESNSKDLVSNIKTEEIDIEECKLEFDNLNVFDLCTIKTETCVEKEVSPTKTDVVLISRETTKTKNVDSNESIQERKSDMENKTNITQRPFDFSVSRNENHQRLQTIKMYSWKKLQEQPYKSSMIEQEPKSLTMDNSSINSLTPKSEMLISSENDILSQTNLEFDIKKEELQSICDLPDFKMEFQDDFDKELHSERSIKSYSWSKSPSCKMLQEQPYKNSMFKKELKFEYENSQQFVKVDNFTMLSSENDRSEIDISSQTTLDMNLEFECKKELLHSICDLPDFKMEFQGFDNELHSERRLKRYSRKQDPSSKKRFLSAAKKCQPHFGKFYGTCSSCGKFFYDILLFLNHFYIYHFFVNTKKSVNLKRNNSGTKHINRQDRSNLNKQIRGQSFTHQSDFKKYIKTQTGEKPFKCKICSKCFTHSTNLKIHIRTHTGEKPFKCKFCSKCFTDSSSLIVHNRTHTDEKPFKCKICLKGFNRSCNLNRHIRTHTDERPFKCKICSKCFRNSSHLNIHFRTHTNEKPFKCKICSKCFTQSSNFKTHIRTHTGEKPFKCKFCSKCFTDSSSLKVHNRTHTDEKPFKCKICSKCFNSSSTLNRHIRTHTDEKPFKCKICSKSFKQSYTLKCHSRTHTDERPFKCKICSKCFTQSCNLKTHIKTH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00057487;
90% Identity
iTF_00057487;
80% Identity
iTF_00057487;