Avir002606.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00001346:157151-159805[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 1.5 1.2e+02 2.9 0.2 26 46 200 220 192 226 0.88 2 10 0.71 56 3.9 0.2 21 52 223 254 221 254 0.87 3 10 0.0047 0.37 10.9 0.1 21 51 251 281 248 283 0.86 4 10 5.7 4.5e+02 1.0 0.1 21 45 279 303 276 307 0.82 5 10 0.044 3.4 7.8 0.0 21 52 307 338 304 340 0.90 6 10 1.4 1.1e+02 3.0 0.1 21 52 335 366 333 366 0.86 7 10 0.14 11 6.2 0.0 20 52 362 394 352 394 0.85 8 10 0.19 15 5.8 0.1 21 44 391 414 389 418 0.91 9 10 0.23 18 5.5 0.2 21 44 419 442 415 446 0.90 10 10 0.0026 0.2 11.8 0.4 21 45 447 471 443 475 0.90
Sequence Information
- Coding Sequence
- ATGGATGGTTTAAAAGAAGCACCAGATTCATTAATGAATAATAAAATGGAAAGTGATCCTAAAGAATTGTTATCTAACATTAAAACCGAAGAAATTGAAATTAAAGAATGTAATCTCGAAATGGAGAACTTGCATCAAATTGACTTTAATATGATAAAAAGGGAAAGTTCTGTAGAAAAAGTTTCTCCAACTAAAAGTGATGTATTAATAAGCAAAGATAATATAAAAGCTGAAAGTGTTAATTTAAATGAGGGTATTCAAGAAAGAAAATATGATATCAAAATTAAGACAGAAATTGTACAGAGTACATTTGATTTCCCTGTTTGTACAAATGCTATCCATGATGTTGAAAATCGACAAACAGTACAAACAATCAAATTATATTCAAGAAAAAAAGGTTTTCTACCAGCGCCAAAAAAGTATCAACCTCACTTTGGGAAATTTTATGGAACATGTTCCTCTTGTGGACAATTTTTCTGTGATAAATTGCTATTTTTAAACCATTTTTATATTTACCACTTTTTAGATTATTCTATAAAATCTGTTAACTTGAGAAGGAATAATTCTGCTAAAAAACATATTGGACAAAAATTCTATAAATGCGAAATTTGTTCAAAATGTTTTACACACTACGGTAATTTAAAAAGGCATGTTAAAATTCACACTAACGAGAATCCTTTTAAATGTGAAATTTGTTCAAAATGTTTTACACGATGTGATACTTTAAAAAAGCATGTTAAAATTCACACTAACGAGAAACCTTTTAAATGTGAAATTTGTTCAAAATGTTTTACACAGTACGGTAATTTAAAAAGGCATGTTATAATTCACACTAACGAGAAACCTTTTAAATGTGAAATTTGTTCAAAATGTTTTACACGATTTGATACTTTAAAAAATCATGTTAAAATTCACACTAACGAGAAACCTTTTAAATGTGAAATTTGTTCAAAATGTTTTACGCTGTCCGGTAATTTAAAAACACATGTTAAAATTCACACTAACGAGAAACCTTTTAAATGTGAAATTTGTTCAAAATGTTTTACACGATGTGATACTTTAGAAAAGCATGTTAAAATTCACACTAACGAGAAACCTTTTAAATGTGAAATTCGTTCAAAATGTTTTACGCAGTCCGGTAATTTAAAAACGCATGTTAAAATTCACAGTAACGAGAAACCTTTTAAATGTAAAATTTGTTCAAAATGTTTCACACATTCCAGTGATTTAAAAAAGCATATTAGAAATCACACTGGTGAAAAACCTTTCAGATGTGAAATTTGTTCAAAATGTTTCATAGATTCCAGTGTTCTAAAAAGGCATATTAGAACTCACACTGGTGAGAAACCTTGTAAGTGTAAAATTTGTTCGAAATGTTTCACACAATCCAGTAATTTAAGTAAGCATATTAGAACAAAACTATTACTGATATTAAAGAAATTGTAA
- Protein Sequence
- MDGLKEAPDSLMNNKMESDPKELLSNIKTEEIEIKECNLEMENLHQIDFNMIKRESSVEKVSPTKSDVLISKDNIKAESVNLNEGIQERKYDIKIKTEIVQSTFDFPVCTNAIHDVENRQTVQTIKLYSRKKGFLPAPKKYQPHFGKFYGTCSSCGQFFCDKLLFLNHFYIYHFLDYSIKSVNLRRNNSAKKHIGQKFYKCEICSKCFTHYGNLKRHVKIHTNENPFKCEICSKCFTRCDTLKKHVKIHTNEKPFKCEICSKCFTQYGNLKRHVIIHTNEKPFKCEICSKCFTRFDTLKNHVKIHTNEKPFKCEICSKCFTLSGNLKTHVKIHTNEKPFKCEICSKCFTRCDTLEKHVKIHTNEKPFKCEIRSKCFTQSGNLKTHVKIHSNEKPFKCKICSKCFTHSSDLKKHIRNHTGEKPFRCEICSKCFIDSSVLKRHIRTHTGEKPCKCKICSKCFTQSSNLSKHIRTKLLLILKKL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00056937;
- 90% Identity
- iTF_00056983;
- 80% Identity
- iTF_00056983;