Basic Information

Insect: Altica viridicyanea
Gene Symbol: -
Assembly: None
Location: GWHAMMQ00001346:157151-159805[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.52 16 6.2 2.8 2 23 151 173 151 173 0.90

2 11 2.1e-06 6.7e-05 23.1 5.9 1 23 199 221 199 221 0.99

3 11 1.2e-05 0.00039 20.7 7.1 1 23 227 249 227 249 0.98

4 11 8.6e-07 2.7e-05 24.4 2.7 1 23 255 277 255 277 0.98

5 11 7.4e-06 0.00023 21.4 4.5 1 23 283 305 283 305 0.98

6 11 4.8e-06 0.00015 22.0 2.8 1 23 311 333 311 333 0.98

7 11 1e-05 0.00032 21.0 5.9 1 23 339 361 339 361 0.98

8 11 0.0066 0.21 12.1 1.1 7 23 373 389 367 389 0.85

9 11 5.9e-07 1.8e-05 24.9 7.9 1 23 395 417 395 417 0.98

10 11 3.5e-07 1.1e-05 25.6 2.8 1 23 423 445 423 445 0.99

11 11 4.8e-06 0.00015 22.0 6.3 1 22 451 472 451 472 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.52	16	6.2	2.8	2	23	151	173	151	173	0.90
2	11	2.1e-06	6.7e-05	23.1	5.9	1	23	199	221	199	221	0.99
3	11	1.2e-05	0.00039	20.7	7.1	1	23	227	249	227	249	0.98
4	11	8.6e-07	2.7e-05	24.4	2.7	1	23	255	277	255	277	0.98
5	11	7.4e-06	0.00023	21.4	4.5	1	23	283	305	283	305	0.98
6	11	4.8e-06	0.00015	22.0	2.8	1	23	311	333	311	333	0.98
7	11	1e-05	0.00032	21.0	5.9	1	23	339	361	339	361	0.98
8	11	0.0066	0.21	12.1	1.1	7	23	373	389	367	389	0.85
9	11	5.9e-07	1.8e-05	24.9	7.9	1	23	395	417	395	417	0.98
10	11	3.5e-07	1.1e-05	25.6	2.8	1	23	423	445	423	445	0.99
11	11	4.8e-06	0.00015	22.0	6.3	1	22	451	472	451	472	0.95

Sequence Information

Coding Sequence: ATGGATGGTTTAAAAGAAGCACCAGATTCATTAATGAATAATAAAATGGAAAGTGATCCTAAAGAATTGTTATCTAACATTAAAACCGAAGAAATTGAAATTAAAGAATGTAATCTCGAAATGGAGAACTTGCATCAAATTGACTTTAATATGATAAAAAGGGAAAGTTCTGTAGAAAAAGTTTCTCCAACTAAAAGTGATGTATTAATAAGCAAAGATAATATAAAAGCTGAAAGTGTTAATTTAAATGAGGGTATTCAAGAAAGAAAATATGATATCAAAATTAAGACAGAAATTGTACAGAGTACATTTGATTTCCCTGTTTGTACAAATGCTATCCATGATGTTGAAAATCGACAAACAGTACAAACAATCAAATTATATTCAAGAAAAAAAGGTTTTCTACCAGCGCCAAAAAAGTATCAACCTCACTTTGGGAAATTTTATGGAACATGTTCCTCTTGTGGACAATTTTTCTGTGATAAATTGCTATTTTTAAACCATTTTTATATTTACCACTTTTTAGATTATTCTATAAAATCTGTTAACTTGAGAAGGAATAATTCTGCTAAAAAACATATTGGACAAAAATTCTATAAATGCGAAATTTGTTCAAAATGTTTTACACACTACGGTAATTTAAAAAGGCATGTTAAAATTCACACTAACGAGAATCCTTTTAAATGTGAAATTTGTTCAAAATGTTTTACACGATGTGATACTTTAAAAAAGCATGTTAAAATTCACACTAACGAGAAACCTTTTAAATGTGAAATTTGTTCAAAATGTTTTACACAGTACGGTAATTTAAAAAGGCATGTTATAATTCACACTAACGAGAAACCTTTTAAATGTGAAATTTGTTCAAAATGTTTTACACGATTTGATACTTTAAAAAATCATGTTAAAATTCACACTAACGAGAAACCTTTTAAATGTGAAATTTGTTCAAAATGTTTTACGCTGTCCGGTAATTTAAAAACACATGTTAAAATTCACACTAACGAGAAACCTTTTAAATGTGAAATTTGTTCAAAATGTTTTACACGATGTGATACTTTAGAAAAGCATGTTAAAATTCACACTAACGAGAAACCTTTTAAATGTGAAATTCGTTCAAAATGTTTTACGCAGTCCGGTAATTTAAAAACGCATGTTAAAATTCACAGTAACGAGAAACCTTTTAAATGTAAAATTTGTTCAAAATGTTTCACACATTCCAGTGATTTAAAAAAGCATATTAGAAATCACACTGGTGAAAAACCTTTCAGATGTGAAATTTGTTCAAAATGTTTCATAGATTCCAGTGTTCTAAAAAGGCATATTAGAACTCACACTGGTGAGAAACCTTGTAAGTGTAAAATTTGTTCGAAATGTTTCACACAATCCAGTAATTTAAGTAAGCATATTAGAACAAAACTATTACTGATATTAAAGAAATTGTAA
Protein Sequence: MDGLKEAPDSLMNNKMESDPKELLSNIKTEEIEIKECNLEMENLHQIDFNMIKRESSVEKVSPTKSDVLISKDNIKAESVNLNEGIQERKYDIKIKTEIVQSTFDFPVCTNAIHDVENRQTVQTIKLYSRKKGFLPAPKKYQPHFGKFYGTCSSCGQFFCDKLLFLNHFYIYHFLDYSIKSVNLRRNNSAKKHIGQKFYKCEICSKCFTHYGNLKRHVKIHTNENPFKCEICSKCFTRCDTLKKHVKIHTNEKPFKCEICSKCFTQYGNLKRHVIIHTNEKPFKCEICSKCFTRFDTLKNHVKIHTNEKPFKCEICSKCFTLSGNLKTHVKIHTNEKPFKCEICSKCFTRCDTLEKHVKIHTNEKPFKCEIRSKCFTQSGNLKTHVKIHSNEKPFKCKICSKCFTHSSDLKKHIRNHTGEKPFRCEICSKCFIDSSVLKRHIRTHTGEKPCKCKICSKCFTQSSNLSKHIRTKLLLILKKL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00056937;
90% Identity: iTF_00057484; iTF_00057460; iTF_00056937;
80% Identity: iTF_00057484;