Basic Information

Insect: Altica viridicyanea
Gene Symbol: -
Assembly: None
Location: GWHAMMQ00001440:154738-159628[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.0079 0.62 10.2 0.2 26 46 191 211 182 217 0.82

2 14 0.63 50 4.1 0.2 21 47 214 240 210 245 0.87

3 14 2.4 1.9e+02 2.3 0.1 25 43 247 264 238 269 0.76

4 14 5 4e+02 1.2 0.2 21 49 270 298 262 303 0.73

5 14 1.9 1.5e+02 2.5 0.2 21 44 298 321 290 324 0.90

6 14 0.15 12 6.1 0.0 17 44 321 349 316 356 0.83

7 14 0.14 11 6.2 0.3 26 46 359 379 350 385 0.86

8 14 0.51 40 4.4 0.0 21 45 382 406 378 415 0.86

9 14 1.4 1.1e+02 3.0 0.0 21 45 439 463 431 470 0.84

10 14 1.1 87 3.3 0.2 11 44 456 490 454 495 0.80

11 14 0.07 5.5 7.2 0.1 22 45 496 519 491 528 0.89

12 14 0.13 10 6.3 0.1 21 45 548 572 540 579 0.86

13 14 0.00049 0.039 14.1 0.1 21 47 576 602 572 609 0.85

14 14 3.7 2.9e+02 1.6 0.1 21 45 604 628 600 633 0.84

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.0079	0.62	10.2	0.2	26	46	191	211	182	217	0.82
2	14	0.63	50	4.1	0.2	21	47	214	240	210	245	0.87
3	14	2.4	1.9e+02	2.3	0.1	25	43	247	264	238	269	0.76
4	14	5	4e+02	1.2	0.2	21	49	270	298	262	303	0.73
5	14	1.9	1.5e+02	2.5	0.2	21	44	298	321	290	324	0.90
6	14	0.15	12	6.1	0.0	17	44	321	349	316	356	0.83
7	14	0.14	11	6.2	0.3	26	46	359	379	350	385	0.86
8	14	0.51	40	4.4	0.0	21	45	382	406	378	415	0.86
9	14	1.4	1.1e+02	3.0	0.0	21	45	439	463	431	470	0.84
10	14	1.1	87	3.3	0.2	11	44	456	490	454	495	0.80
11	14	0.07	5.5	7.2	0.1	22	45	496	519	491	528	0.89
12	14	0.13	10	6.3	0.1	21	45	548	572	540	579	0.86
13	14	0.00049	0.039	14.1	0.1	21	47	576	602	572	609	0.85
14	14	3.7	2.9e+02	1.6	0.1	21	45	604	628	600	633	0.84

Sequence Information

Coding Sequence: ATGGAAACAGAAGATATTGAAATCAAAGAATGTAAACTCGAATTCGAGAACTTGCATCAAATTGCTTTTTATATGACGAAAAGGGAAAGTTGTGTAGAAAAAGTTTTTCCAACAAAAAGTGATGTGTTAATAAGCAAAGAAAATATAAAAACCGAAAATGTTAATTCAAATGAGGGTATAGAAGAAAGAAAAAGTGATGTCGAAACTAAGGCAGAAATTATACAGCGTACATTTGATTTCCCTGTTTGTAGAAATGATATCCATGATTTTGTTGAAAATCGGCAAACAGTGAAAACAATCAAAATGTATTCTAGGAAAAAATGTTTCCTATCATCGGCAAAAAAATGGCAACCTCACATTGGAAATTTCTGTGGAACATGTTACTCTTGTGGACATTCTTTCGGCGATAAATTGCTATTTTTAAACCATTTTTATATTTACCACTTTTTAGTTACTTCTAAAAAATGTGTTAACTTGAGAAGAAATTATTCTGGTTCAAAACACATAAATTTAGAAGATCTTGGTAATTTAAACGAACAGATGAGTTTTCACAGTGGACAAAAATCCTTTAAATGCGAAATTTGTTCAAAATGTTTCACACAATCCAGTAATTTAAAAAGGCATATTAGAACTCACACTGGTGAAAAACCTTTCAGATGTGAAATTTGTTCAAAATGTTTCACACAAAAATCTAGCTTAAAGGAGCATATTAGTAGAATTCACACTGGTGAAAAGTTATTCGAATGTGAAATTTGTTTTAAATATATCACACAAAGTGATTTAGAACAACATATTCGAACTCACACTGGTGAAAATCCTTTTAGATGTGAAATTTGTTCAAAATGTTTCCTACGACAAAATGATTTCAAAAACCATATTAGATTTCACACTGCCGAAAAACCTTTTATTTGTAAATTTTGTTCAAAATGTTTTAGATTCTCTTGTGATTTAAAAGTGCACGTTAGATCTCACAGTGACGAGAAACCTTTTAAATGTGAAATTTGTTCAAAATGTTTTAAAGCATCCGGTCATTTAAAAATCCATATTAGAACTCACACTGGTAAAAAATTATTTAAATGTGAAATTTGTTCAAAATGTTTCACACAACCCAATAATTTAAAAAGACATATTAGAACTCACACTGGTGAAAAACCTTTCATTTGTGAAATTTGTTCAAAAGGTTTCACACAAAAAGGTAGTTTACGAGAGCATATTATTAGAATTCACACTGGTGAAAAGCCATTTAAATGTGAAAACTGTTCAAAATGTTTCCTACGAGAAAGTGAATTAAAACAGCATATTAGAATTCATACAGAAGAAAAACCTTTTAAATGTGAAATTTGTTTAAAAAGTTTTATAAAATCCGGTACTTTAAAAACGCATATAAGAACTCATACTGGTGAAAAACCTTTTAGATGTGAAATTTGTTCGAAATGTTTCATAACTTCCAGTTGTTTAAAAACTCATATTAGAACTCACATTGACGAGAAACCTTTTAAATGCAAAATTTGTTTACAAGGTTTTATAAAATCTTATAATTTTAAAAGACATATTAGAACTCACATATTATTTAAATGTGAAATTTGTTCAAAATGTTTCAGATACCAAAGTGATTTTAAAAAACATTTTAAAACCCACACTGACGAAAAACCGTATAAATGTTACATTTGTTCGAAGTGTTTCACATTTTCCAATAATTTAAAAACTCATATTAGAACTCATACTGACGAGAAACCTTTTAAATGTAAAATTTGTTCAAGATGTTTTACACAATCCGGTAATTTAAAAAGGCATATTAGAACTCATACTGGTGAAAAACCTTTCATTTGTGAAATTTGTTCAAAATGTTTCACAGAAAAAAGTAGCTTAAAACAGCATATTATTAAAACTCACAATAACGAAAAACTAAATACGAATGTAGTTAATACACTCTTGTAA
Protein Sequence: METEDIEIKECKLEFENLHQIAFYMTKRESCVEKVFPTKSDVLISKENIKTENVNSNEGIEERKSDVETKAEIIQRTFDFPVCRNDIHDFVENRQTVKTIKMYSRKKCFLSSAKKWQPHIGNFCGTCYSCGHSFGDKLLFLNHFYIYHFLVTSKKCVNLRRNYSGSKHINLEDLGNLNEQMSFHSGQKSFKCEICSKCFTQSSNLKRHIRTHTGEKPFRCEICSKCFTQKSSLKEHISRIHTGEKLFECEICFKYITQSDLEQHIRTHTGENPFRCEICSKCFLRQNDFKNHIRFHTAEKPFICKFCSKCFRFSCDLKVHVRSHSDEKPFKCEICSKCFKASGHLKIHIRTHTGKKLFKCEICSKCFTQPNNLKRHIRTHTGEKPFICEICSKGFTQKGSLREHIIRIHTGEKPFKCENCSKCFLRESELKQHIRIHTEEKPFKCEICLKSFIKSGTLKTHIRTHTGEKPFRCEICSKCFITSSCLKTHIRTHIDEKPFKCKICLQGFIKSYNFKRHIRTHILFKCEICSKCFRYQSDFKKHFKTHTDEKPYKCYICSKCFTFSNNLKTHIRTHTDEKPFKCKICSRCFTQSGNLKRHIRTHTGEKPFICEICSKCFTEKSSLKQHIIKTHNNEKLNTNVVNTLL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00056813;
90% Identity: iTF_00056813;
80% Identity: iTF_00056813;