Avir003134.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Altica viridicyanea
Gene Symbol
-
Assembly
None
Location
GWHAMMQ00001440:154738-159628[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 1 32 5.2 1.1 2 23 126 148 125 148 0.89
2 17 1.2e-08 3.6e-07 30.2 5.1 1 23 190 212 190 212 0.99
3 17 1.3e-06 4e-05 23.8 3.4 1 23 218 241 218 241 0.97
4 17 0.0011 0.035 14.5 0.6 1 23 247 268 247 268 0.97
5 17 0.0016 0.049 14.1 5.3 1 23 274 296 274 296 0.98
6 17 0.0022 0.068 13.6 7.6 1 23 302 324 302 324 0.98
7 17 3.2e-06 0.0001 22.6 4.6 1 23 330 352 330 352 0.99
8 17 2.6e-08 8.1e-07 29.1 4.1 1 23 358 380 358 380 0.99
9 17 7.7e-06 0.00024 21.4 0.2 1 23 386 409 386 409 0.96
10 17 6.7e-05 0.0021 18.4 3.4 1 23 415 437 415 437 0.99
11 17 1.8e-06 5.7e-05 23.3 1.3 1 23 443 465 443 465 0.99
12 17 3.7e-06 0.00011 22.4 6.5 1 23 471 493 471 493 0.99
13 17 1.2e-05 0.00038 20.7 2.8 1 23 499 521 499 521 0.99
14 17 2.9e-05 0.00091 19.5 7.7 1 23 524 546 524 546 0.99
15 17 3.8e-06 0.00012 22.3 6.2 1 23 552 574 552 574 0.99
16 17 6.8e-08 2.1e-06 27.8 5.2 1 23 580 602 580 602 0.99
17 17 8.7e-06 0.00027 21.2 2.7 1 23 608 631 608 631 0.96

Sequence Information

Coding Sequence
ATGGAAACAGAAGATATTGAAATCAAAGAATGTAAACTCGAATTCGAGAACTTGCATCAAATTGCTTTTTATATGACGAAAAGGGAAAGTTGTGTAGAAAAAGTTTTTCCAACAAAAAGTGATGTGTTAATAAGCAAAGAAAATATAAAAACCGAAAATGTTAATTCAAATGAGGGTATAGAAGAAAGAAAAAGTGATGTCGAAACTAAGGCAGAAATTATACAGCGTACATTTGATTTCCCTGTTTGTAGAAATGATATCCATGATTTTGTTGAAAATCGGCAAACAGTGAAAACAATCAAAATGTATTCTAGGAAAAAATGTTTCCTATCATCGGCAAAAAAATGGCAACCTCACATTGGAAATTTCTGTGGAACATGTTACTCTTGTGGACATTCTTTCGGCGATAAATTGCTATTTTTAAACCATTTTTATATTTACCACTTTTTAGTTACTTCTAAAAAATGTGTTAACTTGAGAAGAAATTATTCTGGTTCAAAACACATAAATTTAGAAGATCTTGGTAATTTAAACGAACAGATGAGTTTTCACAGTGGACAAAAATCCTTTAAATGCGAAATTTGTTCAAAATGTTTCACACAATCCAGTAATTTAAAAAGGCATATTAGAACTCACACTGGTGAAAAACCTTTCAGATGTGAAATTTGTTCAAAATGTTTCACACAAAAATCTAGCTTAAAGGAGCATATTAGTAGAATTCACACTGGTGAAAAGTTATTCGAATGTGAAATTTGTTTTAAATATATCACACAAAGTGATTTAGAACAACATATTCGAACTCACACTGGTGAAAATCCTTTTAGATGTGAAATTTGTTCAAAATGTTTCCTACGACAAAATGATTTCAAAAACCATATTAGATTTCACACTGCCGAAAAACCTTTTATTTGTAAATTTTGTTCAAAATGTTTTAGATTCTCTTGTGATTTAAAAGTGCACGTTAGATCTCACAGTGACGAGAAACCTTTTAAATGTGAAATTTGTTCAAAATGTTTTAAAGCATCCGGTCATTTAAAAATCCATATTAGAACTCACACTGGTAAAAAATTATTTAAATGTGAAATTTGTTCAAAATGTTTCACACAACCCAATAATTTAAAAAGACATATTAGAACTCACACTGGTGAAAAACCTTTCATTTGTGAAATTTGTTCAAAAGGTTTCACACAAAAAGGTAGTTTACGAGAGCATATTATTAGAATTCACACTGGTGAAAAGCCATTTAAATGTGAAAACTGTTCAAAATGTTTCCTACGAGAAAGTGAATTAAAACAGCATATTAGAATTCATACAGAAGAAAAACCTTTTAAATGTGAAATTTGTTTAAAAAGTTTTATAAAATCCGGTACTTTAAAAACGCATATAAGAACTCATACTGGTGAAAAACCTTTTAGATGTGAAATTTGTTCGAAATGTTTCATAACTTCCAGTTGTTTAAAAACTCATATTAGAACTCACATTGACGAGAAACCTTTTAAATGCAAAATTTGTTTACAAGGTTTTATAAAATCTTATAATTTTAAAAGACATATTAGAACTCACATATTATTTAAATGTGAAATTTGTTCAAAATGTTTCAGATACCAAAGTGATTTTAAAAAACATTTTAAAACCCACACTGACGAAAAACCGTATAAATGTTACATTTGTTCGAAGTGTTTCACATTTTCCAATAATTTAAAAACTCATATTAGAACTCATACTGACGAGAAACCTTTTAAATGTAAAATTTGTTCAAGATGTTTTACACAATCCGGTAATTTAAAAAGGCATATTAGAACTCATACTGGTGAAAAACCTTTCATTTGTGAAATTTGTTCAAAATGTTTCACAGAAAAAAGTAGCTTAAAACAGCATATTATTAAAACTCACAATAACGAAAAACTAAATACGAATGTAGTTAATACACTCTTGTAA
Protein Sequence
METEDIEIKECKLEFENLHQIAFYMTKRESCVEKVFPTKSDVLISKENIKTENVNSNEGIEERKSDVETKAEIIQRTFDFPVCRNDIHDFVENRQTVKTIKMYSRKKCFLSSAKKWQPHIGNFCGTCYSCGHSFGDKLLFLNHFYIYHFLVTSKKCVNLRRNYSGSKHINLEDLGNLNEQMSFHSGQKSFKCEICSKCFTQSSNLKRHIRTHTGEKPFRCEICSKCFTQKSSLKEHISRIHTGEKLFECEICFKYITQSDLEQHIRTHTGENPFRCEICSKCFLRQNDFKNHIRFHTAEKPFICKFCSKCFRFSCDLKVHVRSHSDEKPFKCEICSKCFKASGHLKIHIRTHTGKKLFKCEICSKCFTQPNNLKRHIRTHTGEKPFICEICSKGFTQKGSLREHIIRIHTGEKPFKCENCSKCFLRESELKQHIRIHTEEKPFKCEICLKSFIKSGTLKTHIRTHTGEKPFRCEICSKCFITSSCLKTHIRTHIDEKPFKCKICLQGFIKSYNFKRHIRTHILFKCEICSKCFRYQSDFKKHFKTHTDEKPYKCYICSKCFTFSNNLKTHIRTHTDEKPFKCKICSRCFTQSGNLKRHIRTHTGEKPFICEICSKCFTEKSSLKQHIIKTHNNEKLNTNVVNTLL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00057482;
90% Identity
iTF_00057482;
80% Identity
iTF_00057482;