Basic Information

Insect: Altica viridicyanea
Gene Symbol: -
Assembly: None
Location: GWHAMMQ00001738:37144-42910[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.083 6.5 6.9 0.0 20 44 221 245 211 254 0.86

2 13 1.6 1.3e+02 2.8 0.1 21 45 306 330 294 337 0.81

3 13 0.35 27 5.0 0.2 21 44 334 357 330 361 0.89

4 13 0.073 5.8 7.1 0.1 21 44 362 385 357 389 0.87

5 13 0.11 8.7 6.6 0.0 21 48 390 417 386 420 0.87

6 13 2.4 1.9e+02 2.2 0.2 21 45 419 443 414 446 0.87

7 13 0.13 10 6.3 0.6 21 45 447 471 443 474 0.90

8 13 0.48 38 4.5 0.1 21 44 475 498 472 502 0.91

9 13 0.088 7 6.8 0.1 21 46 503 528 499 534 0.86

10 13 2.8 2.2e+02 2.0 0.1 22 45 532 555 528 562 0.83

11 13 1.3 1e+02 3.1 0.1 21 45 559 583 551 590 0.84

12 13 0.76 60 3.8 0.1 21 46 587 612 583 618 0.84

13 13 0.007 0.55 10.4 0.3 21 45 615 639 611 641 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.083	6.5	6.9	0.0	20	44	221	245	211	254	0.86
2	13	1.6	1.3e+02	2.8	0.1	21	45	306	330	294	337	0.81
3	13	0.35	27	5.0	0.2	21	44	334	357	330	361	0.89
4	13	0.073	5.8	7.1	0.1	21	44	362	385	357	389	0.87
5	13	0.11	8.7	6.6	0.0	21	48	390	417	386	420	0.87
6	13	2.4	1.9e+02	2.2	0.2	21	45	419	443	414	446	0.87
7	13	0.13	10	6.3	0.6	21	45	447	471	443	474	0.90
8	13	0.48	38	4.5	0.1	21	44	475	498	472	502	0.91
9	13	0.088	7	6.8	0.1	21	46	503	528	499	534	0.86
10	13	2.8	2.2e+02	2.0	0.1	22	45	532	555	528	562	0.83
11	13	1.3	1e+02	3.1	0.1	21	45	559	583	551	590	0.84
12	13	0.76	60	3.8	0.1	21	46	587	612	583	618	0.84
13	13	0.007	0.55	10.4	0.3	21	45	615	639	611	641	0.91

Sequence Information

Coding Sequence: ATGGATGTTTTCAAAGATGCATCAAATCCATTAATGAATAATAAAATTGAAAGTAATTCCAAAGATTTGTTATCCAATATTAAAACTAAAGAAATTGTTATTGAAGAATATAAAATCGAATTCGAGAACTTGTATGAATTCGATCTTTGTAAGATCAAAACGGAAAGTTATGTAGAAAAAGAAGTTTCTTCAAATAAAACTGATGTTTTGTTAATAAGCAGAGAAACTATAAAAACCGAAAATGTTGATTCAAATGAGAGTATACAAGAAAGAAAAAGTGATATGGAAAATAAGACAAACATTACACAGCGTCCATTTGATTTCCCTGTTAGTAGAAATGAAAATCGACAAAGGCTGCAAACAATTAAAATGTATTCTTGGAAAAAACGTTTCCTATCTTCGGCAAAACAATGGCAACCCGACTTTGGTAAATTCTCTGGAACATGTTCCTCATGTGGACGATTTTTTTGTGATAAATTGTTATTTTTGAACCATTTTCATATTTACCACTTTTTAGTTAATTGTAAAAAATCTGTTAACTTGAGAAGGAATAATTCTACTACAAAACCAATTAACCAAGAATATCTTTGTAATGTAAACGAACAAATGAGTATTCACAGTGGACAACTCGGACATTTAAAAACGCATATGAGGACTCACACTAGTGACACACCTTTTAAATGTAAAATTTGTTCAAAATGTTTCACACAATCCGGTGAATTAAAAGAACATATTAGAACTCACATTGAAGAAAATTCTTTTAAATGTAAAATTTGTTTGAAAGATTTCTCAAGTTTCAGTAATTTATATAGCCATATTAGAATTCACACTGAAGAGAAACCTTTTGAATGTAAGATTTGGATGAAATGTTTCACACAATTCGGTGACTTAAAAACTCATATTAGAACTCACACCAACGAGAAACCTTTTAAATGTAAAATTTGTTCTAAATGTTTCAATCGTTCCAGTCACTTAATAGATCATATTAGAACTCACACTGGTGAAAAACCTTTTAAATGTAAAATTTGTTCTAAATGTTTCAGAAATTCCAGTCACTTAATAACTCATATTAGAACTCACTCTGACGAGAGACCATTTAAATGTAAAATTTGTTCGAAATGTTTCACACAATCCGGTGACTTAAAAGAACATATTAGAACTCACACTGAAGAAAATCCTTTTAAATGTAAAATTTGTTCGAAATATTTTAAAAGTTCCGGTCATTTAAAAAGGCATAATAATAGAACTCACACAGGTGAAAAACCTTTCAGATGTGAAATTTGTTCAAAATGTTTTACATTATCCAGTCATTTAAAAATGCATATTAGAATTCATACTGGTGAAAAACCTTGCAGATGTGAAATTTGTTTAAAATGTTTCACAGGACAAAGTAACTTAAACCGACATGTTAAAACTCATACTGGTGAAAAACCTTTCAAATGTGAAATTTGTTCAAAATGTTTCGCTCACGAAAATAACTTAAAACAGCATATTAGAACTCACACTGGTGAAAAACCTTTTAGATGTGAAATTTGTTCAAAATGTTTCTTACGTTCTGGTGATTTAAAAAGGCATATTACAACTCACACTGGTAAAAAACCTTTCAGATGTGAAATTTGTTTAAAATGTTTCATACGTTCTGCTGATTTAAAAAGTCATATTAGAACACACACTGGTGAAAAACCGTTTAGATGTGAAATTTGTTCAAAATCTTTTCTAAACTCTTGTGATTTAAAAAATCATATTAGAACTCACACAGGTGAAAAACCTTTTCAATGTGAAATTTGTTCAAAATGTTTTAATATTTTCGGTTCTTTAAAAAGGCATCTTAGAACTCACACTGGTGAAAAACCTTTCAGATGTGAAATTTGTTCAAAGTGTTTCACACAAAAGAGTAACTTAAAACGGCATATTAATAGTTGTGACCGTAAAACGTCCTAA
Protein Sequence: MDVFKDASNPLMNNKIESNSKDLLSNIKTKEIVIEEYKIEFENLYEFDLCKIKTESYVEKEVSSNKTDVLLISRETIKTENVDSNESIQERKSDMENKTNITQRPFDFPVSRNENRQRLQTIKMYSWKKRFLSSAKQWQPDFGKFSGTCSSCGRFFCDKLLFLNHFHIYHFLVNCKKSVNLRRNNSTTKPINQEYLCNVNEQMSIHSGQLGHLKTHMRTHTSDTPFKCKICSKCFTQSGELKEHIRTHIEENSFKCKICLKDFSSFSNLYSHIRIHTEEKPFECKIWMKCFTQFGDLKTHIRTHTNEKPFKCKICSKCFNRSSHLIDHIRTHTGEKPFKCKICSKCFRNSSHLITHIRTHSDERPFKCKICSKCFTQSGDLKEHIRTHTEENPFKCKICSKYFKSSGHLKRHNNRTHTGEKPFRCEICSKCFTLSSHLKMHIRIHTGEKPCRCEICLKCFTGQSNLNRHVKTHTGEKPFKCEICSKCFAHENNLKQHIRTHTGEKPFRCEICSKCFLRSGDLKRHITTHTGKKPFRCEICLKCFIRSADLKSHIRTHTGEKPFRCEICSKSFLNSCDLKNHIRTHTGEKPFQCEICSKCFNIFGSLKRHLRTHTGEKPFRCEICSKCFTQKSNLKRHINSCDRKTS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00056836;
90% Identity: iTF_00056836;
80% Identity: iTF_00056836;