Avir004471.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Altica viridicyanea
Gene Symbol
-
Assembly
None
Location
GWHAMMQ00001738:37144-42910[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 1.2 38 5.0 5.1 2 23 148 170 148 170 0.92
2 17 0.57 18 6.0 0.9 13 23 210 220 207 220 0.89
3 17 1.7e-07 5.4e-06 26.5 3.8 1 23 226 248 226 248 0.99
4 17 8.6e-06 0.00027 21.2 1.8 1 23 254 276 254 276 0.99
5 17 0.0087 0.27 11.7 0.4 8 23 289 304 282 304 0.90
6 17 4.3e-07 1.3e-05 25.3 6.5 1 23 310 332 310 332 0.99
7 17 3e-07 9.4e-06 25.8 7.2 1 23 338 360 338 360 0.99
8 17 1.6e-07 4.9e-06 26.7 3.8 1 23 366 388 366 388 0.99
9 17 9.1e-05 0.0028 18.0 6.0 1 23 394 417 394 417 0.96
10 17 4.9e-06 0.00015 22.0 5.3 1 23 423 445 423 445 0.98
11 17 2.8e-05 0.00089 19.6 5.6 2 23 452 473 451 473 0.97
12 17 1.5e-06 4.8e-05 23.5 5.3 1 23 479 501 479 501 0.99
13 17 4.6e-05 0.0015 18.9 3.1 1 23 507 529 507 529 0.98
14 17 1.1e-06 3.4e-05 24.0 2.3 1 23 535 557 535 557 0.99
15 17 6e-05 0.0019 18.5 3.5 1 23 563 585 563 585 0.99
16 17 2.1e-05 0.00065 20.0 3.7 1 23 591 613 591 613 0.99
17 17 3e-07 9.5e-06 25.8 3.3 1 21 619 639 619 640 0.95

Sequence Information

Coding Sequence
ATGGATGTTTTCAAAGATGCATCAAATCCATTAATGAATAATAAAATTGAAAGTAATTCCAAAGATTTGTTATCCAATATTAAAACTAAAGAAATTGTTATTGAAGAATATAAAATCGAATTCGAGAACTTGTATGAATTCGATCTTTGTAAGATCAAAACGGAAAGTTATGTAGAAAAAGAAGTTTCTTCAAATAAAACTGATGTTTTGTTAATAAGCAGAGAAACTATAAAAACCGAAAATGTTGATTCAAATGAGAGTATACAAGAAAGAAAAAGTGATATGGAAAATAAGACAAACATTACACAGCGTCCATTTGATTTCCCTGTTAGTAGAAATGAAAATCGACAAAGGCTGCAAACAATTAAAATGTATTCTTGGAAAAAACGTTTCCTATCTTCGGCAAAACAATGGCAACCCGACTTTGGTAAATTCTCTGGAACATGTTCCTCATGTGGACGATTTTTTTGTGATAAATTGTTATTTTTGAACCATTTTCATATTTACCACTTTTTAGTTAATTGTAAAAAATCTGTTAACTTGAGAAGGAATAATTCTACTACAAAACCAATTAACCAAGAATATCTTTGTAATGTAAACGAACAAATGAGTATTCACAGTGGACAACTCGGACATTTAAAAACGCATATGAGGACTCACACTAGTGACACACCTTTTAAATGTAAAATTTGTTCAAAATGTTTCACACAATCCGGTGAATTAAAAGAACATATTAGAACTCACATTGAAGAAAATTCTTTTAAATGTAAAATTTGTTTGAAAGATTTCTCAAGTTTCAGTAATTTATATAGCCATATTAGAATTCACACTGAAGAGAAACCTTTTGAATGTAAGATTTGGATGAAATGTTTCACACAATTCGGTGACTTAAAAACTCATATTAGAACTCACACCAACGAGAAACCTTTTAAATGTAAAATTTGTTCTAAATGTTTCAATCGTTCCAGTCACTTAATAGATCATATTAGAACTCACACTGGTGAAAAACCTTTTAAATGTAAAATTTGTTCTAAATGTTTCAGAAATTCCAGTCACTTAATAACTCATATTAGAACTCACTCTGACGAGAGACCATTTAAATGTAAAATTTGTTCGAAATGTTTCACACAATCCGGTGACTTAAAAGAACATATTAGAACTCACACTGAAGAAAATCCTTTTAAATGTAAAATTTGTTCGAAATATTTTAAAAGTTCCGGTCATTTAAAAAGGCATAATAATAGAACTCACACAGGTGAAAAACCTTTCAGATGTGAAATTTGTTCAAAATGTTTTACATTATCCAGTCATTTAAAAATGCATATTAGAATTCATACTGGTGAAAAACCTTGCAGATGTGAAATTTGTTTAAAATGTTTCACAGGACAAAGTAACTTAAACCGACATGTTAAAACTCATACTGGTGAAAAACCTTTCAAATGTGAAATTTGTTCAAAATGTTTCGCTCACGAAAATAACTTAAAACAGCATATTAGAACTCACACTGGTGAAAAACCTTTTAGATGTGAAATTTGTTCAAAATGTTTCTTACGTTCTGGTGATTTAAAAAGGCATATTACAACTCACACTGGTAAAAAACCTTTCAGATGTGAAATTTGTTTAAAATGTTTCATACGTTCTGCTGATTTAAAAAGTCATATTAGAACACACACTGGTGAAAAACCGTTTAGATGTGAAATTTGTTCAAAATCTTTTCTAAACTCTTGTGATTTAAAAAATCATATTAGAACTCACACAGGTGAAAAACCTTTTCAATGTGAAATTTGTTCAAAATGTTTTAATATTTTCGGTTCTTTAAAAAGGCATCTTAGAACTCACACTGGTGAAAAACCTTTCAGATGTGAAATTTGTTCAAAGTGTTTCACACAAAAGAGTAACTTAAAACGGCATATTAATAGTTGTGACCGTAAAACGTCCTAA
Protein Sequence
MDVFKDASNPLMNNKIESNSKDLLSNIKTKEIVIEEYKIEFENLYEFDLCKIKTESYVEKEVSSNKTDVLLISRETIKTENVDSNESIQERKSDMENKTNITQRPFDFPVSRNENRQRLQTIKMYSWKKRFLSSAKQWQPDFGKFSGTCSSCGRFFCDKLLFLNHFHIYHFLVNCKKSVNLRRNNSTTKPINQEYLCNVNEQMSIHSGQLGHLKTHMRTHTSDTPFKCKICSKCFTQSGELKEHIRTHIEENSFKCKICLKDFSSFSNLYSHIRIHTEEKPFECKIWMKCFTQFGDLKTHIRTHTNEKPFKCKICSKCFNRSSHLIDHIRTHTGEKPFKCKICSKCFRNSSHLITHIRTHSDERPFKCKICSKCFTQSGDLKEHIRTHTEENPFKCKICSKYFKSSGHLKRHNNRTHTGEKPFRCEICSKCFTLSSHLKMHIRIHTGEKPCRCEICLKCFTGQSNLNRHVKTHTGEKPFKCEICSKCFAHENNLKQHIRTHTGEKPFRCEICSKCFLRSGDLKRHITTHTGKKPFRCEICLKCFIRSADLKSHIRTHTGEKPFRCEICSKSFLNSCDLKNHIRTHTGEKPFQCEICSKCFNIFGSLKRHLRTHTGEKPFRCEICSKCFTQKSNLKRHINSCDRKTS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00057481;
90% Identity
iTF_00057481;
80% Identity
iTF_00057481;