Avir006733.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00000238:53832-61021[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 2 1.6e+02 2.5 0.2 26 46 198 218 193 221 0.89 2 11 0.76 60 3.9 0.2 21 52 221 252 219 252 0.87 3 11 0.0052 0.41 10.8 0.1 21 51 249 279 247 281 0.86 4 11 2.7 2.1e+02 2.1 0.1 21 51 277 307 275 308 0.83 5 11 0.047 3.7 7.7 0.0 21 52 305 336 301 337 0.89 6 11 1.3 1e+02 3.1 0.1 21 52 333 364 331 365 0.87 7 11 0.15 12 6.1 0.0 20 52 360 392 350 392 0.85 8 11 0.098 7.7 6.7 0.0 21 52 389 420 387 421 0.88 9 11 0.14 11 6.2 0.1 21 45 417 441 413 448 0.88 10 11 0.097 7.7 6.7 0.4 21 47 445 471 440 477 0.82 11 11 0.0027 0.21 11.7 0.4 21 45 473 497 469 501 0.90
Sequence Information
- Coding Sequence
- ATGGATGGTTTAAAAGAAGAGCCAGATTCATTAATGAATAATAAAAAGGAAAGTGATCCTAAAGAATTGTTATCTAATATTAAAACCGAAGAAATTCAAATTGAAAAATGTAATCTCGAATTCGAGAACTTGCATCAAATTGACTTTAATATGATAAAAAGGGAAAGTTCTGTAGAAAAAGTTTCTCCAAGTCATGTGTTAATAAGCAAAGATAATATAAAAGCTGAAAATGTTAATTCAAATGAGGGTATTCAAGAAAGAAAATACGATATCAAAATTAAGACAGATATTGTACAGAGTACATTTGATTTCCCTGTTTGTATAAATGCTATCCATGATGTTGAAAATCGACAAACAGTACAAACAATCAAATTGTATTCAAGGAAAAAATGTTTTCTACCAGCGCCAAAAAAGTATCAACCTCACTTTGGGAAATTTTATGGAACATGTTCCTCTTGTGGACAATTTTTCTGTGATAAATTGCTATTTTTAAACCATTTTTATATTTACCACTTTTTAGATTATTCTATAAAATCTGTTAACTTGAGAAGGAATAATTCTGCTAAAAAACATATTGGACAAAAATTCTATAAATGCGAAATTTGTTCAAAATGTTTTACACACTACGGTAATTTAAAAAGGCATGTTAAAATTCACACTAACGAGAATCCTTTTAAATGTGAAATTTGTTCAAAATGTTTTACACGATGTGATACTTTAAAAAAGCATGTTAAAATTCACACTAACGAGAAACCTTTTAAATGTGAAATTTGTTCAAAATGTTTTACACAGTACGGTAATTTAAAAAGGCATGTTATAATTCACACTAACGAGAAACCTTTTAAATGTAAAATTTGTTCAAAATGTTTTACACGATTTGATACTTTAAAAAATCATGTTAAAATTCACACTAACGAGAAACCTTTTAAATGTGAAATTTGTTCAAAATGTTTTACGCTGTCCGGTAATTTAAAAACGCATGTTAAAATTCACACTAACGAGAAACCTTTTAAATGTGAAATTTGTTCAAAATGTTTTACACGATGTGATACTTTAGAAAAGCATGTTAAAATTCACACTAACGAGAAACCTTTTAAATGTGAAATTCGTTCAAAATGTTTTACGCAGTCCGGTAATTTAAAAACGCATGTTAAAATTCACAGTAACGAGAAACCTTTTAAATGTAAAATTTGTTCCAAATGTTTCACAGTCGAAAGTAATTTAAAAAAGCATATTCGAATTCACACTAACGAGAAACCTTTTAAATGTAAAATTTGTTCAAAATGTTTCACACATTCCAGTGATTTAAAAAAGCATATTAGAAGTCACACTGGTGAAAAACCTTTCAGATGTGAAATTTGTTCAAAATGTTTCATAGATTCCAGTGTTCTAAAAAGGCATATTAGAACTCACACTGGTGAGAAACCTTGTAAGTGTAAAATTTGTTCGAAATGTTTCACACAATCCAGTAATTTAAGTAAGCATATTAGAACAAAACTATTACTGATATTAAAGAAATTGTAA
- Protein Sequence
- MDGLKEEPDSLMNNKKESDPKELLSNIKTEEIQIEKCNLEFENLHQIDFNMIKRESSVEKVSPSHVLISKDNIKAENVNSNEGIQERKYDIKIKTDIVQSTFDFPVCINAIHDVENRQTVQTIKLYSRKKCFLPAPKKYQPHFGKFYGTCSSCGQFFCDKLLFLNHFYIYHFLDYSIKSVNLRRNNSAKKHIGQKFYKCEICSKCFTHYGNLKRHVKIHTNENPFKCEICSKCFTRCDTLKKHVKIHTNEKPFKCEICSKCFTQYGNLKRHVIIHTNEKPFKCKICSKCFTRFDTLKNHVKIHTNEKPFKCEICSKCFTLSGNLKTHVKIHTNEKPFKCEICSKCFTRCDTLEKHVKIHTNEKPFKCEIRSKCFTQSGNLKTHVKIHSNEKPFKCKICSKCFTVESNLKKHIRIHTNEKPFKCKICSKCFTHSSDLKKHIRSHTGEKPFRCEICSKCFIDSSVLKRHIRTHTGEKPCKCKICSKCFTQSSNLSKHIRTKLLLILKKL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00056937;
- 90% Identity
- iTF_00056983;
- 80% Identity
- iTF_00056937;