Avir017136.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00000093:226041-228742[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.0041 0.33 11.1 0.2 26 48 199 221 189 225 0.85 2 8 0.0024 0.19 11.9 0.0 21 51 222 252 220 254 0.87 3 8 0.5 39 4.4 0.0 22 52 251 281 248 282 0.86 4 8 5.5 4.3e+02 1.1 0.0 21 45 278 302 276 307 0.83 5 8 3.8 3e+02 1.6 0.1 26 45 311 330 302 337 0.84 6 8 0.59 47 4.2 0.1 21 45 334 358 326 365 0.80 7 8 2 1.6e+02 2.5 0.0 22 52 363 393 358 394 0.83 8 8 7.2e-05 0.0057 16.7 0.1 21 52 390 421 388 422 0.90
Sequence Information
- Coding Sequence
- ATGGATGGTTTAAAAGAAGCGCCAGATTCATTAATGAATAATAAAATGGAAAGTGATCCTAAAGAATTGTTATCTAATATTAAAACCGAAGAAATTGAAATTGAAGAATGTAAACTCGAATTCGAGAACTTGCATCAAATTGACTTTAATTTGATAAAAAGGGAAAGTTCTGTAGAAAGAGTTTCTCCAACTAAAAGTGATGTATTAATAAGCAAAGGTAATATAAAAGCTGAAAATGTTAATTCAAATGAGGGTATTCAAGAAAAAAAATATATCAAAAGTAAGACAGAAATTGTAAAGAGTACATTTGACTTCCCTGTTTGTACAAATACTATCCATGATGTTGAAAATCGACAAACAGTACAAACAATCAAATTATATTCAAGGAAAAAATGTTTTCTACCAGCACCAAAAAAGTATCAACCTCACTTTGGGAAATTTTATGGGACATGTTTCTCTTGTGGACAATTTTTCTATGATAAATTGCTATTTTTAAACCATTTTTATATTTACCACTTTTTAGTTAATTCTATAAAATCTGTTAACTTGAGAAGAAATAATTTTGCTAAAAAACATATTGGACAAAAATCCTATAAATGCAAAATTTGTTCAAAATGTTTTACACAGTCTGGTAATTTAAAAAGACATATTAGAATTCATACTGACGAGAAACCTTTTAAATGTGAAATTTGTTTAAAATGTTTCACACAATCCGGTGATTTAAATAGGCATATTAGAATTCACACTGGCGATAAACCTTTTAAATGTGAAATTTGTTCAAAATGTTTTTCACGAGAAGGTAACTTAAAAGAACATATCAAAATTCACACCGGTGAGAAACCTTTTAAATGTGAAATTTGTTCAAAATGGTTCAAAAATCAAATTTATTTAAAAAATCATATTAGAATTCATACTGGTGAAAATTTATTCAAATGTGAAGTATGTTCGAAATGTTTTAACAATTCCAGTAATTTAAAAATTCATATTAGAAGTCACACTGGTGAGAAACCTTTTAAATGTAAAATTTGTTCAAAATGTTTCACATCTTCCAGTTATTTAAAAGTTCATATTAGAACTCACGCTGGTGATAAACCTTTTAAATGTGAAGTTTGTTCAAATGGTTTTATAGAATTCAGTAAATTAAAAAGGCATATGAAAATTCACAATAACGAGAAACCTTTTAAATGTGAAATTTGTTCAAAATGTTTTACACAGTCCGGTAATTTAAAAAGGCACATGAAAATTCACACTAACGAGAAACCATTTAAAATGTAA
- Protein Sequence
- MDGLKEAPDSLMNNKMESDPKELLSNIKTEEIEIEECKLEFENLHQIDFNLIKRESSVERVSPTKSDVLISKGNIKAENVNSNEGIQEKKYIKSKTEIVKSTFDFPVCTNTIHDVENRQTVQTIKLYSRKKCFLPAPKKYQPHFGKFYGTCFSCGQFFYDKLLFLNHFYIYHFLVNSIKSVNLRRNNFAKKHIGQKSYKCKICSKCFTQSGNLKRHIRIHTDEKPFKCEICLKCFTQSGDLNRHIRIHTGDKPFKCEICSKCFSREGNLKEHIKIHTGEKPFKCEICSKWFKNQIYLKNHIRIHTGENLFKCEVCSKCFNNSSNLKIHIRSHTGEKPFKCKICSKCFTSSSYLKVHIRTHAGDKPFKCEVCSNGFIEFSKLKRHMKIHNNEKPFKCEICSKCFTQSGNLKRHMKIHTNEKPFKM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00057439;
- 90% Identity
- iTF_00056980;
- 80% Identity
- iTF_00056980;