Avir011391.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00000473:614915-618235[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 0.0087 0.69 10.1 0.2 26 48 199 221 190 225 0.85 2 6 0.00077 0.061 13.4 0.1 21 51 222 252 218 254 0.87 3 6 0.45 36 4.6 0.0 22 49 251 278 247 281 0.85 4 6 0.0016 0.13 12.4 0.0 21 46 278 303 276 309 0.90 5 6 4.2 3.3e+02 1.5 0.1 26 49 311 334 304 337 0.80 6 6 0.0014 0.11 12.6 0.1 21 52 334 365 326 366 0.90
Sequence Information
- Coding Sequence
- ATGGATGGTTTAAAAGAAGCGCCAGATTCATTAATGAATAATAAAATGGAAAGTGATCCTAAAGAATTGTTATCTAATATTAAAAACGAAGAAATTCAAATTGAAGAATGTTATCTCGAATTCGAGAACTTGCATAAAATTGACTTTAATATGATAAAAAGGGAAAGTTCTGTAGAAAAAGTTTCTCCAAGTGATGTGTTAATAAGCAAAGATAATATAAAAGCTGAAAATGTTAATTCAAATGAGGGTATTCAAGAAAGAAAATATGATATCAAAATTAAGACAGAAATTGTACAGAGTACATTTGATTTCCCTGTTTGTACAAATGCTATCCATGATTTTGTTCAAAATCGACAAACAGTGCAAACAATCAAAATGTATTCAAGGAAAAAATGTTTTCTACCAGCACCAAAAAAGTATCAACCTTACTTTGGGAAATTTTATGGAACATGTTTCTCTTGTGGACAATTTTTCTGTGATAAATTGCTATTTTTAAACCATTTTTATATTTACCACTTTTTAGTTAATTCTATAAAATCTGTTAACTTGAGAAGAAATAATTTTGCTAAAAAACATATTGGACAAAAATCCTATAAATGCAAAATTTGTTCAAAATGTTTTACACAGTCCGGTAATTTAAACAGACATATTAGAATTCATACTGACGAGAAACCTTTTAAATGTGAAATTTGTTTAAAATGTTTCACACAATCCGGTGATTTAAAAAGACATATTAGAATTCACACTGGCGATAAACCTTTTAAATGTGAAATTTGTTCAAAATGTTTTTCACGAGAAGGTAACTTAAAAGAACATATCAAAATTCACACCGGTGAGAAACCTTTTAAATGTGAAATTTGTTTAAAATGTTTCACACAATCCGGTGATTTAAAAAGACATATTAGAATTCACACTGGCGATAAAACTTTTAAATGTGAAATTTGTTCAAAATGTTTTTCACGGGAAAGTAAGTTAAGAGAACATATCAAAATTCACACCGGTGAGAAACCTTTTAAATGTGAAATTTGTTCAAAATGTTTTACACAGTCCGGTAATTTAAAAAGTCATGTTAAAATTCACACTAACGAGAAACCTTTTAAATGTTAA
- Protein Sequence
- MDGLKEAPDSLMNNKMESDPKELLSNIKNEEIQIEECYLEFENLHKIDFNMIKRESSVEKVSPSDVLISKDNIKAENVNSNEGIQERKYDIKIKTEIVQSTFDFPVCTNAIHDFVQNRQTVQTIKMYSRKKCFLPAPKKYQPYFGKFYGTCFSCGQFFCDKLLFLNHFYIYHFLVNSIKSVNLRRNNFAKKHIGQKSYKCKICSKCFTQSGNLNRHIRIHTDEKPFKCEICLKCFTQSGDLKRHIRIHTGDKPFKCEICSKCFSREGNLKEHIKIHTGEKPFKCEICLKCFTQSGDLKRHIRIHTGDKTFKCEICSKCFSRESKLREHIKIHTGEKPFKCEICSKCFTQSGNLKSHVKIHTNEKPFKC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00057061; iTF_00056980; iTF_00057455;
- 90% Identity
- iTF_00057061;
- 80% Identity
- iTF_00057061;