Avir001470.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00001169:144143-149545[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.8 63 3.8 0.1 22 44 176 198 168 202 0.87 2 11 0.0062 0.49 10.5 0.3 21 45 203 227 198 234 0.86 3 11 0.38 30 4.8 0.1 21 44 231 254 227 257 0.90 4 11 0.012 0.95 9.6 0.0 12 51 249 289 241 291 0.73 5 11 0.015 1.2 9.3 0.3 22 46 288 312 283 319 0.89 6 11 4.8 3.8e+02 1.3 0.1 21 44 343 366 335 370 0.88 7 11 0.006 0.48 10.6 0.6 21 45 371 395 363 407 0.83 8 11 0.19 15 5.8 0.3 20 48 426 454 408 458 0.78 9 11 0.0024 0.19 11.9 0.1 21 51 455 485 451 487 0.87 10 11 0.85 67 3.7 0.2 21 45 483 507 479 514 0.86 11 11 3.3 2.6e+02 1.8 0.2 21 46 511 536 503 542 0.83
Sequence Information
- Coding Sequence
- ATGGATGATTTGTCAATAAATTCTGTCACTATTAAAAGTGAAATTTTAATCAGTGAAAATGATATTTTAAGTCAAACTAATCATGAAATCAATATTGAATTTGACATTAAAAAAGAAGAATTGCACTCTGTTTGTTATTTACCATATTTTAAAATGGAATTTCCAGATTTTGATGAAAAATTAAATTTAGAGCGAAGCATCAAAAAATATTCGAGGAAACAGGATCTAAGTTGTAAAAAACGTTTCCTATCTGCGGCAACAAAATGGCAACCTCACTTTGGAAAATTCTATGGAACATGTTCATCTTGTGGAAAATTTTTCTATGATAAATTGTTATTTTTAAGCCATTATTATATTTACCACTTTTTCGCTAATTCGAAAAAATCTGTTAACTTAAGAAGGAATAATTCTGGCATAAAACATATTAACCGACAAAAAAATCTTAGTAATATAAACAAACAGATAAGGGCGGACAGTTTCACACAACAAAGTCATTTAAAAAAATATATTACAACCCACAATGGCGAAAAACGTTTTAAATGTAAGATTTGTTTAAAATGTTTCACACAATCCAGTCACTTAAAAACTCATATTAGAACTCACACTGGCGAGAAACCTTTTAAATGTAAAATTTGTTCAAAATGTTTTACACAATCCTGTAATTTAAAAAGTCATATTAGAACTCATACTGACGAGAAACCTTTTAAATGTAAAATTTGTGCAAAATGTTTCAAACATTCCAGTACCTTAAAAACTCATATTAGAAATCACACTGACGAGAAACCTTTTAAATGTAAAATATGTTCGAAATTTTTCACACAATCCGGTAGTTTAAAATCTCATATTAGAATTCACACTGACGACAAACCTTTTAAATGTAAAATATGTTTGAAATGTTTCACAGAATCCAGTAATTTAAATAGACATATTAGAATTCACACAGACGAGAAACGTTTTAAATGTAAAATATGTTCGAAATGTTTCATAGATTCCAGTGGATTAAAAAGTCATATTAGAATTCACACTGGTGAGAAACCTTTTAAATGTAAATTATGTTCGAAATGTTTCACACAACTCAGTGACTTAAAAACTCATATTAGAACTCACACTGGCGAAAAACCTTTTAAATGTAAAATTTGTTCAAAATGTTTCACACAATCCTGTAATTTAAAAAGTCATATTAGAACTCATACTGACGAGAAACATTTTAAATGTAAAATTTGTGCGAAATGTTTCAATCATTCCAGTACCTTAAAAACTCATATTAGAACTCACACTGACGAGAAACCTTTTAAATGTAAAATATGTTCGAAATTTTTCACACAATGCGGTAGTTTAAAATCTCATATTAGAATTCACACTGACGAGAAACCTTTTAAATGTAAAATATGTTTAAAATGTTTCACAGAATCCAGTAATTTAAATAGACATATTAGAATTCACACAGACGAGAAACCTTTTAAATGTAAATTATGTTCGAAATGTTTCACACTATCCTGTAATTTAAAAAGTCATATTAGAACTCACACTGGTGAGAAACCTTTTAAATGTAAATTATGTTCGAAATGTTTCACACACTCCGCTAGTTTAAAAGTTCATATTAGAACTCACACTAACGAAAAACCTTTTTAA
- Protein Sequence
- MDDLSINSVTIKSEILISENDILSQTNHEINIEFDIKKEELHSVCYLPYFKMEFPDFDEKLNLERSIKKYSRKQDLSCKKRFLSAATKWQPHFGKFYGTCSSCGKFFYDKLLFLSHYYIYHFFANSKKSVNLRRNNSGIKHINRQKNLSNINKQIRADSFTQQSHLKKYITTHNGEKRFKCKICLKCFTQSSHLKTHIRTHTGEKPFKCKICSKCFTQSCNLKSHIRTHTDEKPFKCKICAKCFKHSSTLKTHIRNHTDEKPFKCKICSKFFTQSGSLKSHIRIHTDDKPFKCKICLKCFTESSNLNRHIRIHTDEKRFKCKICSKCFIDSSGLKSHIRIHTGEKPFKCKLCSKCFTQLSDLKTHIRTHTGEKPFKCKICSKCFTQSCNLKSHIRTHTDEKHFKCKICAKCFNHSSTLKTHIRTHTDEKPFKCKICSKFFTQCGSLKSHIRIHTDEKPFKCKICLKCFTESSNLNRHIRIHTDEKPFKCKLCSKCFTLSCNLKSHIRTHTGEKPFKCKLCSKCFTHSASLKVHIRTHTNEKPF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00057396;
- 90% Identity
- iTF_00056845;
- 80% Identity
- iTF_00056845;