Basic Information

Insect: Altica viridicyanea
Gene Symbol: -
Assembly: None
Location: GWHAMMQ00001828:61757-68523[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 1.3 1.1e+02 3.1 0.2 22 44 231 253 223 257 0.87

2 13 0.01 0.81 9.9 0.2 21 44 258 281 253 289 0.88

3 13 0.42 33 4.7 0.1 21 44 286 309 283 313 0.90

4 13 0.013 1 9.5 0.1 5 48 298 341 295 345 0.75

5 13 0.14 11 6.2 0.1 22 46 343 367 340 374 0.85

6 13 3.9 3.1e+02 1.6 0.0 21 46 370 395 365 402 0.84

7 13 0.26 20 5.4 0.2 23 45 400 422 393 429 0.86

8 13 0.72 57 3.9 0.0 21 51 426 456 422 458 0.85

9 13 8.4 6.6e+02 0.5 0.1 21 44 454 477 450 481 0.88

10 13 0.11 9 6.5 0.0 21 45 482 506 474 513 0.85

11 13 0.015 1.2 9.3 0.0 21 44 510 533 506 537 0.90

12 13 0.0049 0.39 10.9 0.1 21 45 538 562 534 569 0.86

13 13 0.41 32 4.7 0.1 21 48 566 593 562 598 0.85

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	1.3	1.1e+02	3.1	0.2	22	44	231	253	223	257	0.87
2	13	0.01	0.81	9.9	0.2	21	44	258	281	253	289	0.88
3	13	0.42	33	4.7	0.1	21	44	286	309	283	313	0.90
4	13	0.013	1	9.5	0.1	5	48	298	341	295	345	0.75
5	13	0.14	11	6.2	0.1	22	46	343	367	340	374	0.85
6	13	3.9	3.1e+02	1.6	0.0	21	46	370	395	365	402	0.84
7	13	0.26	20	5.4	0.2	23	45	400	422	393	429	0.86
8	13	0.72	57	3.9	0.0	21	51	426	456	422	458	0.85
9	13	8.4	6.6e+02	0.5	0.1	21	44	454	477	450	481	0.88
10	13	0.11	9	6.5	0.0	21	45	482	506	474	513	0.85
11	13	0.015	1.2	9.3	0.0	21	44	510	533	506	537	0.90
12	13	0.0049	0.39	10.9	0.1	21	45	538	562	534	569	0.86
13	13	0.41	32	4.7	0.1	21	48	566	593	562	598	0.85

Sequence Information

Coding Sequence: ATGGATATTTCTGTAATTAAACAAGCAGAAATAGAAGTTGTTGATGAACCAAAACCCGAATTGCATTGTTTTGATCAGATGGAAATAATTCAAGAAGAGCCCTATAAAAGTAGTATGTTTAAAAAAGAACCGAAATTCGAATACGAAAACACGCAACAATTCGTAACAATGGATAATTCTACTAAAAGTGAAATGTTAAACAGTGAAGATGATAAAAGTGAAATAGATATTTCAAGTAAAACTACTCTTGATAGAAATCATGAATTTGAGTGTAAAAAAGAACTATTGCACTCTATTTGCGATTTACCGGATTTTAAAATGGAATTTCAAGATTTTGATAAAGAATTACATTCAGAGCGACGCATCAAAAGATATTCCAGGAAACAGGATCCAAGTTGTAAAAAGCGTTTTCTATCAGCGGCAAAAAAATGGCAACCTCACTTTGGAAAATTCTATGGACCATGTTCATCTTGTGGAAAATTTTTCTATGATAAATTGTTATTTTTAAGCCATTTTTATATTTTCCACTTTTTCGTTAATTCGAAAAAATCTGTTAACTTAAGAAGGACAAATTCTGGCATAAAACATATTAACCGACAAAAAAATCTTAGTAATATAAACAAACAGATAAGGGCGGACAGTTTCACACAACAAAGTGATTTAAAAAAATATATTACAACCCACAATGGCGAAAAACGTTTTAAATGTAAGATTTGTTCAAAATGTTTCACACAATCCAGTCACTTAAAAACTCATATTAGAACTCACACTGGCGAGAAACCTTTTAAATGTAAAATTTGTTCAAAATGTTTTACACAATCCTGTAATTTAAAAAGTCATATTATAACTCATACTGACGAGAAACCTTTTAAATGTAAAATTTGTGCGAAATGTTTCAAACATTCCAGTACCTTAAAAACTCATATTAGAACTCACACTGACGAGAAACCTTTTAAATGTAAAATATGTTCGAAATTTTTCACACAATCCGGTAGTTTAAAATCTCATATTAGAATTCACACAGACGATAAACCTTTTAAATGTAAATTATGTTCGAAATGTTTCACACTATCCCGTAATTTAAAAAGTCATATTAGAACTCACACTGGTGAGAAACCTTTTAAATGTAAATTATGTTTGAAATGTTTCACACACTCCGGTTATTTAAAAACTCATATTAGAACTCACACTGGCGGGAAACCTTTTAAATGTAAAATTTGTTCAAAATGTTTCACAAAATCCTGTAACTTAAAAACTCATATTAGAACTCATACTGGCGAGAAACCTTTTAAATGTAAAATATGTTCGAAATGTTTCACATATTCCAGTGGATTAAAAAGTCATATTAGAATCCACACTGGTGAGAAACCTTTTAAATGTAAATTATGTTCGAAATGTTTCACAAAATCCAGTATTTTAAAAACTCATATTAGAACTCATACTGACGAGAAACCCTATAAATGTGAAATATGTTCGAAATATTTCTTAAATTCCAGTAACTTAAAAAGTCATATTAGAACTCACACTGACGAGAAACCTTTTAAATGTAAAATTTGTTCGAAATGGTTCACACAATCCAGTAATTTAAAAAGTCATATTAGAACTCATACTGACGAGAAACCTTTTAAATGTGAAATATGTTCGAAATGTTTCACACAATCCAGTAACTTAAAAACTCATATTAGAACTCATACTGACGAGAAACCTTTTAAATGTAAGTTATGTTCAAAATGTTTCACACAATCCGGTAGTTTAAAAGTTCATATTAAAACTCACACTAACGAAAAACCTTTTAAATGTTAA
Protein Sequence: MDISVIKQAEIEVVDEPKPELHCFDQMEIIQEEPYKSSMFKKEPKFEYENTQQFVTMDNSTKSEMLNSEDDKSEIDISSKTTLDRNHEFECKKELLHSICDLPDFKMEFQDFDKELHSERRIKRYSRKQDPSCKKRFLSAAKKWQPHFGKFYGPCSSCGKFFYDKLLFLSHFYIFHFFVNSKKSVNLRRTNSGIKHINRQKNLSNINKQIRADSFTQQSDLKKYITTHNGEKRFKCKICSKCFTQSSHLKTHIRTHTGEKPFKCKICSKCFTQSCNLKSHIITHTDEKPFKCKICAKCFKHSSTLKTHIRTHTDEKPFKCKICSKFFTQSGSLKSHIRIHTDDKPFKCKLCSKCFTLSRNLKSHIRTHTGEKPFKCKLCLKCFTHSGYLKTHIRTHTGGKPFKCKICSKCFTKSCNLKTHIRTHTGEKPFKCKICSKCFTYSSGLKSHIRIHTGEKPFKCKLCSKCFTKSSILKTHIRTHTDEKPYKCEICSKYFLNSSNLKSHIRTHTDEKPFKCKICSKWFTQSSNLKSHIRTHTDEKPFKCEICSKCFTQSSNLKTHIRTHTDEKPFKCKLCSKCFTQSGSLKVHIKTHTNEKPFKC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00057448; iTF_00056845; iTF_00056853;
90% Identity: iTF_00056853;
80% Identity: iTF_00056853;