Basic Information

Insect: Altica viridicyanea
Gene Symbol: -
Assembly: None
Location: GWHAMMQ00000785:230660-235684[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.21 17 5.6 0.1 23 53 129 158 125 159 0.87

2 17 1.3 1e+02 3.1 0.2 21 44 183 206 174 216 0.82

3 17 0.25 20 5.4 0.2 22 44 213 235 207 239 0.87

4 17 0.12 9.4 6.4 0.2 21 45 240 264 235 272 0.86

5 17 0.0038 0.3 11.2 0.1 21 46 297 322 294 330 0.87

6 17 0.017 1.3 9.1 0.1 20 46 352 378 345 380 0.91

7 17 0.48 38 4.5 0.3 21 46 381 406 379 412 0.83

8 17 0.49 39 4.5 0.0 21 45 409 433 405 436 0.90

9 17 0.66 53 4.0 0.2 21 44 437 460 433 463 0.80

10 17 0.0026 0.21 11.7 0.2 21 52 465 496 461 497 0.90

11 17 0.14 11 6.2 0.1 22 45 494 517 489 524 0.87

12 17 0.45 36 4.6 0.0 22 52 523 553 517 554 0.85

13 17 0.0031 0.25 11.5 0.1 21 46 550 575 547 581 0.87

14 17 1.5 1.2e+02 2.9 0.2 21 44 578 601 574 609 0.87

15 17 5.3 4.2e+02 1.2 0.0 22 51 608 637 602 639 0.82

16 17 6.1 4.9e+02 0.9 0.1 21 44 635 658 631 662 0.85

17 17 0.55 44 4.3 0.1 21 45 663 687 655 690 0.88

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.21	17	5.6	0.1	23	53	129	158	125	159	0.87
2	17	1.3	1e+02	3.1	0.2	21	44	183	206	174	216	0.82
3	17	0.25	20	5.4	0.2	22	44	213	235	207	239	0.87
4	17	0.12	9.4	6.4	0.2	21	45	240	264	235	272	0.86
5	17	0.0038	0.3	11.2	0.1	21	46	297	322	294	330	0.87
6	17	0.017	1.3	9.1	0.1	20	46	352	378	345	380	0.91
7	17	0.48	38	4.5	0.3	21	46	381	406	379	412	0.83
8	17	0.49	39	4.5	0.0	21	45	409	433	405	436	0.90
9	17	0.66	53	4.0	0.2	21	44	437	460	433	463	0.80
10	17	0.0026	0.21	11.7	0.2	21	52	465	496	461	497	0.90
11	17	0.14	11	6.2	0.1	22	45	494	517	489	524	0.87
12	17	0.45	36	4.6	0.0	22	52	523	553	517	554	0.85
13	17	0.0031	0.25	11.5	0.1	21	46	550	575	547	581	0.87
14	17	1.5	1.2e+02	2.9	0.2	21	44	578	601	574	609	0.87
15	17	5.3	4.2e+02	1.2	0.0	22	51	608	637	602	639	0.82
16	17	6.1	4.9e+02	0.9	0.1	21	44	635	658	631	662	0.85
17	17	0.55	44	4.3	0.1	21	45	663	687	655	690	0.88

Sequence Information

Coding Sequence: ATGAACAGAGAATTTATAAAACCGGAAAATGAGTGTATGCAAGAAAGAAAAAGTGAAATCGAAATTAAGACAGAAATTATACAGCGTCCATTTGATTTCCCTGTTCGTAGAAATGATTTTGGTGAAAATCGACAAATAGTACAAACAATCAACATGTATTCTAGGAAAAAACGTTTCCTATCTGCGACAAAAAAAAGGCAAAGCCACTTTGGAAAACTCTATGGTACATGTTCCTCTTGTGGAAAAAATTTCTATGATAAAGTGCTATTTTTGAATCATTTTTACATTTATCACTTTTTAGCTAATTGTAACAAATCTGTTATTTTGAGAAGGAAGAATTCTGCGACAAAACACATTGAACAGATGCTAACTCATCTTGGACAAAAACCCTTTAAATGCGAAGTTTGTTTTAAATGTTACACCACATCTTATAATCTAAAAATACATTGTCAAACTCATTTTGGTAAAAATTCTGTGAGTGGCGAAATTTGTTTAGAACAGTTTACACAACAAAGTAGTTTAAAAAAACATATTAGAACTCACACTGGTGAAAAACCTTTCAGATGTGAAATTTGTTCAAAATGTTTCTCACAAAAAAGCAGCTTAAAAGAACATAATATTAGAACTCATATCGGTGAAAAGTCATTCAAATGTGAAATTTGCTCAAAATGTTTCACAATATCCTCTAATTTAAAAAGGCATATTCGAACTCACACTGGCGAAAAACCTTTTAGATGTGAAATTTGTTCAAAATGTTTCACACAAAAAAGTAACTTAAAGGAACATACTATTAGAACTCACATCGGTGAAAAGTCATTCAAATGTAACATTTGTTTAAAATGTTACCCACATGAAAAGGATTTGAAAAATCATATTAAAATTCACACTGGCGAAAAACCTTTTAAATGTGAAATTTGTTCAAAATGTTTCATACAATCCAGTAATTTAAAAAAGCATATTAGAACTCACACTGGCGAAAAACCTTTTAAATGTAAAATTTGTTCAAAATGTTTCACACTAAACGGACATTTAAAACATCACATTAAAACTCACACTAGTGAAAAACCTTTCAGATGTGAAATTTGTTCAAAATGTTTCAAACAAGAAAAGGGTTTAAAAAATCATATTAAAATTCACACTGGCGAGAGACCTTTGAAATGTGAAATTTGTTCAAAATGTTTCATACGATCCAGTGAATTAAAACAGCATATTCAAACTCACACTGGCGAAAAACCTTTTAAATGTAAAATTTGTTTAAAATGTTTCACACAAAACGGACATTTAAAACATCACATTAAAACTCACACTGGTGAAAAACCTTTTACATGTGAAATTTGTTCAAAATGTTTCATACGATTCAATGAATTAAAACAGCATATTCGTACTCACACTGACGAAAAACCTTTTAAATGTAAAATCTGTTCGAAATGTTTCAAACAACAAAAATATTTAAAACGGCATATTAGAACTCACACTTGGGAAAAACCTTTCAGATGTGAAATTTGTTTAAAATGTTTCTCACAAAAAAGTAATTTAAAAGAACACACTATTAGCACTCACATCGGTGAAAACTCATTCAAATGTGAAATTTGTTCAAAATGTTACCTACAAGAAAAGGATTTGAAAAAGCACATTCAAATTCACACTGCCGAGAAACCTTTTAAATGTGAAATTTGTTCAAAATGTTTCATACAATCCAGTAATTTAAAAAAGCATATTCGAACTCACACTGGTGAAAAACCTTTCAGATGTGAAATTTGTTCAAAATGTTTCACACAAAATAGTACCTTAAAAGAACATACTATTAGAACTCACAATGGTGAAAAGTCATTCAAATGTGAAATTTGTTTAAAATGTTACACACATGAAAAGGATTTGAAAAATCATATTAAAATTCACACAGGTGAGAAACCTTTTAAATGTGAATTTTGTTCAAAATGTTTCATACGATCCAGTGAATTAAAACAGCATATTCGAACTCACACTGGCGAAAAACCTTTTAAATGCAAAATTTGTTCAAAATGTTTCACACAAAACGGACATTTAAAACATCACATTAAAACACACTGGTGA
Protein Sequence: MNREFIKPENECMQERKSEIEIKTEIIQRPFDFPVRRNDFGENRQIVQTINMYSRKKRFLSATKKRQSHFGKLYGTCSSCGKNFYDKVLFLNHFYIYHFLANCNKSVILRRKNSATKHIEQMLTHLGQKPFKCEVCFKCYTTSYNLKIHCQTHFGKNSVSGEICLEQFTQQSSLKKHIRTHTGEKPFRCEICSKCFSQKSSLKEHNIRTHIGEKSFKCEICSKCFTISSNLKRHIRTHTGEKPFRCEICSKCFTQKSNLKEHTIRTHIGEKSFKCNICLKCYPHEKDLKNHIKIHTGEKPFKCEICSKCFIQSSNLKKHIRTHTGEKPFKCKICSKCFTLNGHLKHHIKTHTSEKPFRCEICSKCFKQEKGLKNHIKIHTGERPLKCEICSKCFIRSSELKQHIQTHTGEKPFKCKICLKCFTQNGHLKHHIKTHTGEKPFTCEICSKCFIRFNELKQHIRTHTDEKPFKCKICSKCFKQQKYLKRHIRTHTWEKPFRCEICLKCFSQKSNLKEHTISTHIGENSFKCEICSKCYLQEKDLKKHIQIHTAEKPFKCEICSKCFIQSSNLKKHIRTHTGEKPFRCEICSKCFTQNSTLKEHTIRTHNGEKSFKCEICLKCYTHEKDLKNHIKIHTGEKPFKCEFCSKCFIRSSELKQHIRTHTGEKPFKCKICSKCFTQNGHLKHHIKTHW

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00056795;
90% Identity: iTF_00056795;
80% Identity: iTF_00056795;