Avir015591.1


Basic Information
Transcription Factor Domain
Sequence Information
Similar Transcription Factors

Basic Information

Insect
Altica viridicyanea
Gene Symbol
-
Assembly
None
Location
GWHAMMQ00000785:230660-235684[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 21 0.021 0.67 10.5 0.9 2 23 76 98 76 98 0.91
2 21 0.0032 0.1 13.1 7.9 1 23 131 153 131 153 0.96
3 21 0.00015 0.0048 17.3 0.3 5 23 163 181 162 181 0.95
4 21 2.4e-05 0.00074 19.8 4.1 1 23 187 210 187 210 0.94
5 21 1.6e-07 5e-06 26.6 4.3 1 23 216 238 216 238 0.99
6 21 2.8e-06 8.7e-05 22.7 4.4 1 23 244 267 244 267 0.96
7 21 0.00016 0.005 17.2 4.4 1 23 273 295 273 295 0.99
8 21 3.4e-08 1.1e-06 28.8 4.4 1 23 301 323 301 323 0.99
9 21 4.5e-05 0.0014 19.0 9.3 1 23 329 351 329 351 0.99
10 21 5.8e-06 0.00018 21.7 3.3 1 23 357 379 357 379 0.98
11 21 6.8e-07 2.1e-05 24.7 2.6 2 23 386 407 385 407 0.97
12 21 2e-05 0.00063 20.0 9.4 1 23 413 435 413 435 0.99
13 21 4.4e-06 0.00014 22.1 3.9 1 23 441 463 441 463 0.99
14 21 4.8e-07 1.5e-05 25.1 7.7 1 23 469 491 469 491 0.99
15 21 9.7e-06 0.0003 21.0 3.6 1 23 497 520 497 520 0.96
16 21 0.00064 0.02 15.3 2.9 1 23 526 548 526 548 0.98
17 21 3.4e-08 1.1e-06 28.8 4.4 1 23 554 576 554 576 0.99
18 21 1.4e-05 0.00043 20.6 4.1 1 23 582 605 582 605 0.96
19 21 0.00012 0.0036 17.7 5.1 1 23 611 633 611 633 0.99
20 21 7.8e-07 2.4e-05 24.5 4.9 1 23 639 661 639 661 0.99
21 21 4.8e-06 0.00015 22.0 9.7 1 23 667 689 667 689 0.99

Sequence Information

Coding Sequence
ATGAACAGAGAATTTATAAAACCGGAAAATGAGTGTATGCAAGAAAGAAAAAGTGAAATCGAAATTAAGACAGAAATTATACAGCGTCCATTTGATTTCCCTGTTCGTAGAAATGATTTTGGTGAAAATCGACAAATAGTACAAACAATCAACATGTATTCTAGGAAAAAACGTTTCCTATCTGCGACAAAAAAAAGGCAAAGCCACTTTGGAAAACTCTATGGTACATGTTCCTCTTGTGGAAAAAATTTCTATGATAAAGTGCTATTTTTGAATCATTTTTACATTTATCACTTTTTAGCTAATTGTAACAAATCTGTTATTTTGAGAAGGAAGAATTCTGCGACAAAACACATTGAACAGATGCTAACTCATCTTGGACAAAAACCCTTTAAATGCGAAGTTTGTTTTAAATGTTACACCACATCTTATAATCTAAAAATACATTGTCAAACTCATTTTGGTAAAAATTCTGTGAGTGGCGAAATTTGTTTAGAACAGTTTACACAACAAAGTAGTTTAAAAAAACATATTAGAACTCACACTGGTGAAAAACCTTTCAGATGTGAAATTTGTTCAAAATGTTTCTCACAAAAAAGCAGCTTAAAAGAACATAATATTAGAACTCATATCGGTGAAAAGTCATTCAAATGTGAAATTTGCTCAAAATGTTTCACAATATCCTCTAATTTAAAAAGGCATATTCGAACTCACACTGGCGAAAAACCTTTTAGATGTGAAATTTGTTCAAAATGTTTCACACAAAAAAGTAACTTAAAGGAACATACTATTAGAACTCACATCGGTGAAAAGTCATTCAAATGTAACATTTGTTTAAAATGTTACCCACATGAAAAGGATTTGAAAAATCATATTAAAATTCACACTGGCGAAAAACCTTTTAAATGTGAAATTTGTTCAAAATGTTTCATACAATCCAGTAATTTAAAAAAGCATATTAGAACTCACACTGGCGAAAAACCTTTTAAATGTAAAATTTGTTCAAAATGTTTCACACTAAACGGACATTTAAAACATCACATTAAAACTCACACTAGTGAAAAACCTTTCAGATGTGAAATTTGTTCAAAATGTTTCAAACAAGAAAAGGGTTTAAAAAATCATATTAAAATTCACACTGGCGAGAGACCTTTGAAATGTGAAATTTGTTCAAAATGTTTCATACGATCCAGTGAATTAAAACAGCATATTCAAACTCACACTGGCGAAAAACCTTTTAAATGTAAAATTTGTTTAAAATGTTTCACACAAAACGGACATTTAAAACATCACATTAAAACTCACACTGGTGAAAAACCTTTTACATGTGAAATTTGTTCAAAATGTTTCATACGATTCAATGAATTAAAACAGCATATTCGTACTCACACTGACGAAAAACCTTTTAAATGTAAAATCTGTTCGAAATGTTTCAAACAACAAAAATATTTAAAACGGCATATTAGAACTCACACTTGGGAAAAACCTTTCAGATGTGAAATTTGTTTAAAATGTTTCTCACAAAAAAGTAATTTAAAAGAACACACTATTAGCACTCACATCGGTGAAAACTCATTCAAATGTGAAATTTGTTCAAAATGTTACCTACAAGAAAAGGATTTGAAAAAGCACATTCAAATTCACACTGCCGAGAAACCTTTTAAATGTGAAATTTGTTCAAAATGTTTCATACAATCCAGTAATTTAAAAAAGCATATTCGAACTCACACTGGTGAAAAACCTTTCAGATGTGAAATTTGTTCAAAATGTTTCACACAAAATAGTACCTTAAAAGAACATACTATTAGAACTCACAATGGTGAAAAGTCATTCAAATGTGAAATTTGTTTAAAATGTTACACACATGAAAAGGATTTGAAAAATCATATTAAAATTCACACAGGTGAGAAACCTTTTAAATGTGAATTTTGTTCAAAATGTTTCATACGATCCAGTGAATTAAAACAGCATATTCGAACTCACACTGGCGAAAAACCTTTTAAATGCAAAATTTGTTCAAAATGTTTCACACAAAACGGACATTTAAAACATCACATTAAAACACACTGGTGA
Protein Sequence
MNREFIKPENECMQERKSEIEIKTEIIQRPFDFPVRRNDFGENRQIVQTINMYSRKKRFLSATKKRQSHFGKLYGTCSSCGKNFYDKVLFLNHFYIYHFLANCNKSVILRRKNSATKHIEQMLTHLGQKPFKCEVCFKCYTTSYNLKIHCQTHFGKNSVSGEICLEQFTQQSSLKKHIRTHTGEKPFRCEICSKCFSQKSSLKEHNIRTHIGEKSFKCEICSKCFTISSNLKRHIRTHTGEKPFRCEICSKCFTQKSNLKEHTIRTHIGEKSFKCNICLKCYPHEKDLKNHIKIHTGEKPFKCEICSKCFIQSSNLKKHIRTHTGEKPFKCKICSKCFTLNGHLKHHIKTHTSEKPFRCEICSKCFKQEKGLKNHIKIHTGERPLKCEICSKCFIRSSELKQHIQTHTGEKPFKCKICLKCFTQNGHLKHHIKTHTGEKPFTCEICSKCFIRFNELKQHIRTHTDEKPFKCKICSKCFKQQKYLKRHIRTHTWEKPFRCEICLKCFSQKSNLKEHTISTHIGENSFKCEICSKCYLQEKDLKKHIQIHTAEKPFKCEICSKCFIQSSNLKKHIRTHTGEKPFRCEICSKCFTQNSTLKEHTIRTHNGEKSFKCEICLKCYTHEKDLKNHIKIHTGEKPFKCEFCSKCFIRSSELKQHIRTHTGEKPFKCKICSKCFTQNGHLKHHIKTHW

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00057413;
90% Identity
iTF_00057413;
80% Identity
iTF_00057413;