Basic Information

Insect: Altica viridicyanea
Gene Symbol: -
Assembly: None
Location: GWHAMMQ00001140:63727-73757[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 1.8 1.5e+02 2.6 0.0 21 45 227 251 218 258 0.73

2 14 0.044 3.4 7.8 0.1 17 44 250 278 245 286 0.82

3 14 3.2 2.6e+02 1.8 0.0 21 45 311 335 307 342 0.88

4 14 0.45 35 4.6 0.1 22 48 340 366 335 371 0.84

5 14 3.3 2.6e+02 1.8 0.1 22 48 369 395 364 399 0.83

6 14 0.036 2.9 8.1 0.0 21 52 396 427 392 428 0.88

7 14 1.8 1.4e+02 2.6 0.0 21 45 424 448 422 456 0.86

8 14 0.024 1.9 8.6 0.2 22 47 482 507 477 512 0.87

9 14 0.021 1.7 8.8 0.0 21 52 509 540 505 540 0.87

10 14 0.065 5.2 7.3 0.1 21 46 537 562 535 564 0.91

11 14 0.0085 0.67 10.1 0.1 21 46 607 632 603 635 0.91

12 14 7.5 5.9e+02 0.7 0.1 22 45 650 673 647 676 0.87

13 14 0.0016 0.12 12.4 0.1 21 45 677 701 673 709 0.87

14 14 1.1 88 3.3 0.1 21 44 705 728 701 732 0.86

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	1.8	1.5e+02	2.6	0.0	21	45	227	251	218	258	0.73
2	14	0.044	3.4	7.8	0.1	17	44	250	278	245	286	0.82
3	14	3.2	2.6e+02	1.8	0.0	21	45	311	335	307	342	0.88
4	14	0.45	35	4.6	0.1	22	48	340	366	335	371	0.84
5	14	3.3	2.6e+02	1.8	0.1	22	48	369	395	364	399	0.83
6	14	0.036	2.9	8.1	0.0	21	52	396	427	392	428	0.88
7	14	1.8	1.4e+02	2.6	0.0	21	45	424	448	422	456	0.86
8	14	0.024	1.9	8.6	0.2	22	47	482	507	477	512	0.87
9	14	0.021	1.7	8.8	0.0	21	52	509	540	505	540	0.87
10	14	0.065	5.2	7.3	0.1	21	46	537	562	535	564	0.91
11	14	0.0085	0.67	10.1	0.1	21	46	607	632	603	635	0.91
12	14	7.5	5.9e+02	0.7	0.1	22	45	650	673	647	676	0.87
13	14	0.0016	0.12	12.4	0.1	21	45	677	701	673	709	0.87
14	14	1.1	88	3.3	0.1	21	44	705	728	701	732	0.86

Sequence Information

Coding Sequence: ATGGAAGTTTTCCAAGATGCATTAAATACGTTAATAAATAATAAAATAGGAAATGATTCTAACGATTTGTTATCCCATATTAAAACCGAAGAACCTGATACTTTCGAAGAATCTAATCTTGAACTAGAGAACTTGCATCAATTTGATCTCTGTAAGATCAAAACGGAAAGTTATGTAGAAAAAGTTTCTCCAACTAAAAGTGATCTCTTAATGAACAGAGAAAATATAAAAATCGAAAATATCGATTCAAATGAGGGTATGGAAGAAAGAAAATGTGATATCGAAATTAATACAGAAATTACACAGCTTCCATTTGATTTTCCTGTTTGTAGAAATGATTTGGTTGAAAATCGACAAAAAGTACAAACAATCAACATGTATTCTAGGAAAAAACGTTTCCTCTCTGCGACAAAAAAATGGCAAACTCACTTTGGAAAACTGAATGGAACATGTTACTCTTGTGGAAAATTTTTCTATGATAAAGTGCTATTTTTAAATCATTTTTATATTTACCACTGTTTAGCTAATTGTAAAAAATCTGTTATCTTGGGAAGAAACAATTCTGCTACAAAACACGCTAAAGTAGAAGATCTTCGTAATTTAAACGAACATATGCAAACTCACACTGGACAAATATCCACATTTTATAACCAAAAAATACATTCGCAAACTCACTTTAGTGAAAATTCTTTAAGTTGTAATATTTGTTTAAAAAATTTTACAAAACAAAGTCGTTTAAAAAAACATATGAGATCCCACTCTGGCGACAAACCGTTTAAATGTGAAATTTGTTCAAAAAGTTACAAACAATCCAGTCATTTAAAAAGCCATATGATAACGCACACCGGTGAAAAACCTTTCAGATGTGAAATTTGTTTAAAATGCTTCCCATTTCAAAATAAGTTAAAAGATCATATTAAAATTCACTCTGATGAGAGACCTTTTAAATGTATATTTTGTTCTAAATGTTCGAAGAGTTCCAGTGATTTAAAAAAACACATTAAAACTCACACTGTTGAAAAATCTTTCAGATGTGAAATTTGTTTAAAATGTTTCAAACAAAAAGGCAACTTAAAAGAGCATTATATTAGAACTCACATGGGCGAAAAGTCATTCAAATGTGAAATTTGCTCAAAATGTTTCCCACATCAAAGGGATTTAAAAACTCATATTAAAATTCACACCGACGAGAAACCTTTTAAATGTGAAATTTGTTTCAAAGGTTTCATACAATCCAGTCATTTAAAACTGCATATTCGAATGCACACTAACGAAAAGCCTTTTAAATGTGAAATTTGTTCAAAATGTTTTTTTGATTCAGGTCAATTAAAAAGTCATATTAAAACTCACATTGAAGAAAAACCTTTCAAATGTGAAATTTGTTCAAAATGTTTCACACGAAAAGGTGGCTTAAAAGAGCATAATATTAGAATTCACATCGGTGAAAAGCCATTCAAATGTGAAATTTGCTCAAAATGTTTCCCACAACAGAGGCAGTTAAAAAAGCATATTAAAACTCACAATGGCGAGAAACCTTTTAAATGTAATATTTGTTTAAAAGGTTTCAAACAATCCGATCATTTAAAAATGCATATTCGAATTCACACTAACGAAAAGCCTTTTAAATGTGACATTTGTTCAAAATGTTTCATACAATCCGGTCAATTAAAAAAGCATATTCGAATTCACTCTGATGAATCTGATAAGTTAAACAACCATATTAGAATTGACACTGTTGAAAAATCTTTCAAATGTGAAATTTGTTCAAAATGTTTCACACAAAACGGACATTTAAAAGATCATATGAAAACTCACACTGGGGAAAAACCTTTCAGATGTGAAATTTGTTCAAAATATTTTAGAAGTTCTAGTCATTTAAAAAGGCATATTAAAATTCACACTAAGGAATCTAATAAGTTAAACAACCATATTACAATTGATACTGGGGAAAAATCTGTAAGATGTGAAATTTGTACGAAATGTTTTAAAACTTCCACTTATTTAAAAATGCATATTAAAACTCACACTGATGAAAAACCTTTCAGATGTGAAATTTGTTCAAAATGTTTTCTACAGTCTGGTAATTTAAAAAGGCATATAAGAAGTCACACTGGTGAAAAACCTTTCCAATGTGAAATTTGTTCAAAATGTTTCACACAAAAAGGTACCTTAAAAGAGCATATTAGAACTCACACTGACAAATGA
Protein Sequence: MEVFQDALNTLINNKIGNDSNDLLSHIKTEEPDTFEESNLELENLHQFDLCKIKTESYVEKVSPTKSDLLMNRENIKIENIDSNEGMEERKCDIEINTEITQLPFDFPVCRNDLVENRQKVQTINMYSRKKRFLSATKKWQTHFGKLNGTCYSCGKFFYDKVLFLNHFYIYHCLANCKKSVILGRNNSATKHAKVEDLRNLNEHMQTHTGQISTFYNQKIHSQTHFSENSLSCNICLKNFTKQSRLKKHMRSHSGDKPFKCEICSKSYKQSSHLKSHMITHTGEKPFRCEICLKCFPFQNKLKDHIKIHSDERPFKCIFCSKCSKSSSDLKKHIKTHTVEKSFRCEICLKCFKQKGNLKEHYIRTHMGEKSFKCEICSKCFPHQRDLKTHIKIHTDEKPFKCEICFKGFIQSSHLKLHIRMHTNEKPFKCEICSKCFFDSGQLKSHIKTHIEEKPFKCEICSKCFTRKGGLKEHNIRIHIGEKPFKCEICSKCFPQQRQLKKHIKTHNGEKPFKCNICLKGFKQSDHLKMHIRIHTNEKPFKCDICSKCFIQSGQLKKHIRIHSDESDKLNNHIRIDTVEKSFKCEICSKCFTQNGHLKDHMKTHTGEKPFRCEICSKYFRSSSHLKRHIKIHTKESNKLNNHITIDTGEKSVRCEICTKCFKTSTYLKMHIKTHTDEKPFRCEICSKCFLQSGNLKRHIRSHTGEKPFQCEICSKCFTQKGTLKEHIRTHTDK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00056806;
90% Identity: iTF_00056806;
80% Identity: iTF_00056806;